docker.io/fvogt257/vcf2gwas:v0.8.9 linux/amd64

docker.io/fvogt257/vcf2gwas:v0.8.9 - 国内下载镜像源 浏览次数:30

这是一个用于将VCF文件转换为GWAS格式的Docker容器镜像。

源镜像 docker.io/fvogt257/vcf2gwas:v0.8.9
国内镜像 swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9
镜像ID sha256:26edefda7f60841b0034503132ce7a7ea19554ecf2ba2098a239c3dab6332af8
镜像TAG v0.8.9
大小 3.81GB
镜像源 docker.io
项目信息 Docker-Hub主页 🚀项目TAG 🚀
CMD
启动入口 /commands.sh
工作目录 /vcf2gwas
OS/平台 linux/amd64
浏览量 30 次
贡献者
镜像创建 2023-05-27T21:01:12.869147133Z
同步时间 2025-04-22 09:52
更新时间 2025-05-31 04:59
环境变量
PATH=/root/miniconda3/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LANG=C.UTF-8 GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D PYTHON_VERSION=3.11.3 PYTHON_PIP_VERSION=22.3.1 PYTHON_SETUPTOOLS_VERSION=65.5.1 PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/0d8570dc44796f4369b652222cf176b3db6ac70e/public/get-pip.py PYTHON_GET_PIP_SHA256=96461deced5c2a487ddc65207ec5a9cffeca0d34e7af7ea1afc470ff0d746207

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9  docker.io/fvogt257/vcf2gwas:v0.8.9

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9  docker.io/fvogt257/vcf2gwas:v0.8.9

Shell快速替换命令

sed -i 's#fvogt257/vcf2gwas:v0.8.9#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9 && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9  docker.io/fvogt257/vcf2gwas:v0.8.9'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9 && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/fvogt257/vcf2gwas:v0.8.9  docker.io/fvogt257/vcf2gwas:v0.8.9'

镜像构建历史


# 2023-05-28 05:01:12  0.00B 配置容器启动时运行的命令
ENTRYPOINT ["/commands.sh"]
                        
# 2023-05-28 05:01:12  76.00B 执行命令并创建新的镜像层
RUN |1 PATH=/root/miniconda3/bin:/root/miniconda3/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin /bin/sh -c chmod +x /commands.sh # buildkit
                        
# 2023-05-28 05:01:11  76.00B 复制新文件或目录到容器中
COPY ./commands.sh / # buildkit
                        
# 2023-05-28 05:01:10  3.40GB 执行命令并创建新的镜像层
RUN |1 PATH=/root/miniconda3/bin:/root/miniconda3/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin /bin/sh -c wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh     && mkdir /root/.conda     && bash Miniconda3-latest-Linux-x86_64.sh -b     && rm -f Miniconda3-latest-Linux-x86_64.sh     && echo "Running $(conda --version)" &&     conda init bash &&     . /root/.bashrc &&     conda update conda &&     conda create -n python-app &&     conda activate python-app &&     conda install vcf2gwas -c bioconda -c conda-forge -c fvogt257 &&     conda list &&     vcf2gwas --version # buildkit
                        
# 2023-05-28 05:01:10  0.00B 定义构建参数
ARG PATH=/root/miniconda3/bin:/root/miniconda3/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2023-05-28 05:01:10  0.00B 设置环境变量 PATH
ENV PATH=/root/miniconda3/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2023-05-28 00:17:55  275.73MB 执行命令并创建新的镜像层
RUN /bin/sh -c apt-get update && apt-get -y upgrade   && apt-get install -y --no-install-recommends     git     wget     g++     ca-certificates     && rm -rf /var/lib/apt/lists/* # buildkit
                        
# 2023-05-27 02:18:37  0.00B 设置工作目录为/vcf2gwas
WORKDIR /vcf2gwas
                        
# 2023-05-23 09:20:14  0.00B 设置默认要执行的命令
CMD ["python3"]
                        
# 2023-05-23 09:20:14  12.19MB 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 		savedAptMark="$(apt-mark showmanual)"; 	apt-get update; 	apt-get install -y --no-install-recommends wget; 		wget -O get-pip.py "$PYTHON_GET_PIP_URL"; 	echo "$PYTHON_GET_PIP_SHA256 *get-pip.py" | sha256sum -c -; 		apt-mark auto '.*' > /dev/null; 	[ -z "$savedAptMark" ] || apt-mark manual $savedAptMark > /dev/null; 	apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; 	rm -rf /var/lib/apt/lists/*; 		export PYTHONDONTWRITEBYTECODE=1; 		python get-pip.py 		--disable-pip-version-check 		--no-cache-dir 		--no-compile 		"pip==$PYTHON_PIP_VERSION" 		"setuptools==$PYTHON_SETUPTOOLS_VERSION" 	; 	rm -f get-pip.py; 		pip --version # buildkit
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PYTHON_GET_PIP_SHA256
ENV PYTHON_GET_PIP_SHA256=96461deced5c2a487ddc65207ec5a9cffeca0d34e7af7ea1afc470ff0d746207
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PYTHON_GET_PIP_URL
ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/0d8570dc44796f4369b652222cf176b3db6ac70e/public/get-pip.py
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PYTHON_SETUPTOOLS_VERSION
ENV PYTHON_SETUPTOOLS_VERSION=65.5.1
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PYTHON_PIP_VERSION
ENV PYTHON_PIP_VERSION=22.3.1
                        
# 2023-05-23 09:20:14  32.00B 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 	for src in idle3 pydoc3 python3 python3-config; do 		dst="$(echo "$src" | tr -d 3)"; 		[ -s "/usr/local/bin/$src" ]; 		[ ! -e "/usr/local/bin/$dst" ]; 		ln -svT "$src" "/usr/local/bin/$dst"; 	done # buildkit
                        
# 2023-05-23 09:20:14  31.83MB 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 		savedAptMark="$(apt-mark showmanual)"; 	apt-get update; 	apt-get install -y --no-install-recommends 		dpkg-dev 		gcc 		gnupg 		libbluetooth-dev 		libbz2-dev 		libc6-dev 		libdb-dev 		libexpat1-dev 		libffi-dev 		libgdbm-dev 		liblzma-dev 		libncursesw5-dev 		libreadline-dev 		libsqlite3-dev 		libssl-dev 		make 		tk-dev 		uuid-dev 		wget 		xz-utils 		zlib1g-dev 	; 		wget -O python.tar.xz "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz"; 	wget -O python.tar.xz.asc "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz.asc"; 	GNUPGHOME="$(mktemp -d)"; export GNUPGHOME; 	gpg --batch --keyserver hkps://keys.openpgp.org --recv-keys "$GPG_KEY"; 	gpg --batch --verify python.tar.xz.asc python.tar.xz; 	gpgconf --kill all; 	rm -rf "$GNUPGHOME" python.tar.xz.asc; 	mkdir -p /usr/src/python; 	tar --extract --directory /usr/src/python --strip-components=1 --file python.tar.xz; 	rm python.tar.xz; 		cd /usr/src/python; 	gnuArch="$(dpkg-architecture --query DEB_BUILD_GNU_TYPE)"; 	./configure 		--build="$gnuArch" 		--enable-loadable-sqlite-extensions 		--enable-optimizations 		--enable-option-checking=fatal 		--enable-shared 		--with-lto 		--with-system-expat 		--without-ensurepip 	; 	nproc="$(nproc)"; 	EXTRA_CFLAGS="$(dpkg-buildflags --get CFLAGS)"; 	LDFLAGS="$(dpkg-buildflags --get LDFLAGS)"; 	LDFLAGS="${LDFLAGS:--Wl},--strip-all"; 	make -j "$nproc" 		"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" 		"LDFLAGS=${LDFLAGS:-}" 		"PROFILE_TASK=${PROFILE_TASK:-}" 	; 	rm python; 	make -j "$nproc" 		"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" 		"LDFLAGS=${LDFLAGS:--Wl},-rpath='\$\$ORIGIN/../lib'" 		"PROFILE_TASK=${PROFILE_TASK:-}" 		python 	; 	make install; 		cd /; 	rm -rf /usr/src/python; 		find /usr/local -depth 		\( 			\( -type d -a \( -name test -o -name tests -o -name idle_test \) \) 			-o \( -type f -a \( -name '*.pyc' -o -name '*.pyo' -o -name 'libpython*.a' \) \) 		\) -exec rm -rf '{}' + 	; 		ldconfig; 		apt-mark auto '.*' > /dev/null; 	apt-mark manual $savedAptMark; 	find /usr/local -type f -executable -not \( -name '*tkinter*' \) -exec ldd '{}' ';' 		| awk '/=>/ { print $(NF-1) }' 		| sort -u 		| xargs -r dpkg-query --search 		| cut -d: -f1 		| sort -u 		| xargs -r apt-mark manual 	; 	apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; 	rm -rf /var/lib/apt/lists/*; 		python3 --version # buildkit
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PYTHON_VERSION
ENV PYTHON_VERSION=3.11.3
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 GPG_KEY
ENV GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D
                        
# 2023-05-23 09:20:14  3.11MB 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 	apt-get update; 	apt-get install -y --no-install-recommends 		ca-certificates 		netbase 		tzdata 	; 	rm -rf /var/lib/apt/lists/* # buildkit
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 LANG
ENV LANG=C.UTF-8
                        
# 2023-05-23 09:20:14  0.00B 设置环境变量 PATH
ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2023-05-23 09:20:14  0.00B 
/bin/sh -c #(nop)  CMD ["bash"]
                        
# 2023-05-23 09:20:14  80.53MB 
/bin/sh -c #(nop) ADD file:88252a7f118b4d6f55dd5baf49dbcaa053c9d6172c652963c1151fa76f625e44 in / 
                        
                    

镜像信息

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    "Id": "sha256:26edefda7f60841b0034503132ce7a7ea19554ecf2ba2098a239c3dab6332af8",
    "RepoTags": [
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    "RepoDigests": [
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    ],
    "Parent": "",
    "Comment": "buildkit.dockerfile.v0",
    "Created": "2023-05-27T21:01:12.869147133Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
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            "GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D",
            "PYTHON_VERSION=3.11.3",
            "PYTHON_PIP_VERSION=22.3.1",
            "PYTHON_SETUPTOOLS_VERSION=65.5.1",
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        "Cmd": null,
        "ArgsEscaped": true,
        "Image": "",
        "Volumes": null,
        "WorkingDir": "/vcf2gwas",
        "Entrypoint": [
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        "OnBuild": null,
        "Labels": null
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    "Architecture": "amd64",
    "Os": "linux",
    "Size": 3807439382,
    "GraphDriver": {
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}

更多版本

docker.io/fvogt257/vcf2gwas:v0.8.9

linux/amd64 docker.io3.81GB2025-04-22 09:52
29