0.00B |
2024-07-19 19:12:45 |
CMD ["/usr/bin/bash"] |
583.27MB |
2024-07-19 19:12:45 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c chmod -R a+rx /root/ # buildkit |
0.00B |
2024-07-19 19:12:39 |
WORKDIR /home/gpipe |
192.00B |
2024-07-19 19:12:39 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c echo 'export PS1="$ "' >> /root/.bash_profile # buildkit |
0.00B |
2024-07-19 19:12:39 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c rm -rf binaries # buildkit |
687.00B |
2024-07-19 19:12:38 |
COPY ncbirc /netopt/ncbi_tools64/.ncbirc # buildkit |
3.31MB |
2024-07-19 19:12:38 |
COPY libstdc++.so.6 libgcc_s.so.1 libgomp.so.1 /opt/ncbi/gcc/12.2.0/lib64/ # buildkit |
95.70KB |
2024-07-19 19:12:38 |
COPY liblmdb.so /opt/ncbi/64/lmdb-0.9.24/lib64/liblmdb.so # buildkit |
0.00B |
2024-07-19 19:12:38 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir -p /opt/ncbi/64/lmdb-0.9.24/lib64/ /opt/ncbi/gcc/12.2.0/lib64/ # buildkit |
27.91KB |
2024-07-19 19:12:37 |
COPY scripts/* /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin/ # buildkit |
359.42MB |
2024-07-19 19:12:37 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ./cleanup_image.sh # buildkit |
1.21KB |
2024-07-19 19:12:36 |
COPY ./cleanup_image.sh /root # buildkit |
475.78MB |
2024-07-19 19:12:36 |
COPY binaries/bin/* /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/ # buildkit |
96.00B |
2024-07-19 19:12:35 |
COPY package.versions /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/ # buildkit |
163.79MB |
2024-07-19 19:12:35 |
COPY binaries/third-party-bin /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin # buildkit |
475.78MB |
2024-07-19 19:12:35 |
COPY binaries/bin /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin # buildkit |
0.00B |
2024-07-19 19:12:34 |
ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value |
0.00B |
2024-07-19 19:12:34 |
ENV NI_SERVICE_NAME_TAXONOMY=some bogus value |
0.00B |
2024-07-19 19:12:34 |
ENV PATH=/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin |
0.00B |
2024-07-19 19:12:34 |
ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin |
0.00B |
2024-07-19 19:12:34 |
ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system |
0.00B |
2024-07-19 19:12:34 |
ENV NCBI=/netopt/ncbi_tools64 |
297.33KB |
2024-07-19 19:12:34 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c useradd -ms /bin/bash gpipe # buildkit |
0.00B |
2024-07-19 19:12:33 |
WORKDIR /root |
141.85MB |
2024-07-19 19:12:33 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c find . -maxdepth 1 -type f -not -name "*.p*" -not -name "*.txt" -not -name "*.ini" -not -name "cluster_blastp_wnode" -print0 | xargs -0 -i strip {} # buildkit |
0.00B |
2024-07-19 19:12:31 |
WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin |
110.00B |
2024-07-19 19:12:31 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mv ${GP_HOME}/next ${GP_HOME}/current && ln -s ${GP_HOME}/current/arch/x86_64/bin ${GP_HOME}/bin # buildkit |
28.00B |
2024-07-19 19:12:31 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ln -s /netmnt/vast01/gp/ThirdParty /panfs/pan1/gpipe/ThirdParty # buildkit |
6.00B |
2024-07-19 19:12:30 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c cd /netmnt/vast01/gp/ThirdParty/tRNAscan-SE && rm -rf production && ln -s ${trnascan_version} production # buildkit |
165.82MB |
2024-07-19 19:12:30 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir /netmnt/vast01/gp/ThirdParty/GeneMark && cd /netmnt/vast01/gp/ThirdParty/GeneMark && tar xvf /root/binaries/genemark.tgz # buildkit |
2.73GB |
2024-07-19 19:12:27 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar --exclude='*/etc' --exclude='*/setup' --exclude='*/src.tar.gz' -xvf install.tar.gz -C /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system && tar xvPf linked_exe.tar -C / && tar xvPf libraries.tar -C / --skip-old-files && tar xvPf trnascan.tgz -C / # buildkit |
0.00B |
2024-07-19 19:12:09 |
WORKDIR /root/binaries |
25.85MB |
2024-07-19 19:12:09 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf pplacer.tgz -C / # buildkit |
25.36MB |
2024-07-19 19:12:09 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf prodigal.tgz -C / # buildkit |
27.62MB |
2024-07-19 19:12:08 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf infernal.tgz -C / # buildkit |
1.96GB |
2024-07-19 19:12:05 |
COPY binaries /root/binaries # buildkit |
0.00B |
2024-07-19 19:12:02 |
WORKDIR /root |
25.87MB |
2024-07-19 19:12:02 |
COPY pplacer.tgz /root # buildkit |
25.37MB |
2024-07-19 19:12:02 |
COPY prodigal.tgz /root # buildkit |
27.64MB |
2024-07-19 19:12:02 |
COPY infernal.tgz /root # buildkit |
34.00B |
2024-07-19 19:12:02 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir -p ${GP_HOME} && ln -s /panfs/pan1.be-md.ncbi.nlm.nih.gov /panfs/pan1 # buildkit |
0.00B |
2024-07-19 19:12:01 |
ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system |
0.00B |
2024-07-19 19:12:01 |
ENV PGAP_VERSION=2024-07-18.build7555 |
208.00B |
2024-07-19 19:12:01 |
COPY DATA_CONFIG /root/venv/lib/python3.9/site-packages/checkm/DATA_CONFIG # buildkit |
12.34MB |
2024-07-19 19:12:01 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U setuptools # buildkit |
0.00B |
2024-07-19 19:11:59 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 show setuptools # buildkit |
177.95MB |
2024-07-19 19:11:58 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U checkm-genome # buildkit |
0.00B |
2024-07-19 19:11:53 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 show setuptools # buildkit |
116.57MB |
2024-07-19 19:11:52 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U pysam # buildkit |
95.44MB |
2024-07-19 19:11:50 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U matplotlib # buildkit |
90.80MB |
2024-07-19 19:11:45 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install numpy==1.26.4 # buildkit |
15.71MB |
2024-07-19 19:11:41 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c /opt/python-3.9/bin/python3.9 -m venv venv # buildkit |
2.47KB |
2024-07-19 19:11:38 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ln -s /usr/bin/node /usr/bin/nodejs && rm /etc/yum.repos.d/ncbi.repo && echo -e "* soft nofile 8192\n* hard nofile 8192\n" >> /etc/security/limits.conf # buildkit |
60.65MB |
2024-07-19 19:11:37 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install bzip2-devel xz-devel zlib-devel # buildkit |
12.90MB |
2024-07-19 19:11:36 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum makecache # buildkit |
147.94MB |
2024-07-19 19:11:34 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install binutils perl sqlite ncbi-crispr${ncbi_crisper_version} nodejs ncbi-gcc730-opt-libs ncbi-gcc493-opt-libs python3-pyyaml # buildkit |
138.19MB |
2024-07-19 19:11:30 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install ncbi-python39 nodejs # buildkit |
49.04MB |
2024-07-19 19:11:25 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install https://repo.ius.io/ius-release-el7.rpm https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm # buildkit |
1.08GB |
2024-07-19 19:11:23 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y groupinstall development # buildkit |
17.90MB |
2024-07-19 19:10:45 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install yum-utils # buildkit |
168.05MB |
2024-07-19 19:10:43 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y update -v # buildkit |
121.00B |
2024-07-19 19:10:28 |
RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c echo "ip_resolve=4" >> /etc/yum.conf # buildkit |
1.66KB |
2024-07-19 19:10:27 |
COPY --chown=root:root etc /etc # buildkit |
0.00B |
2024-06-27 20:51:13 |
WORKDIR /root |
0.00B |
2024-06-27 20:51:13 |
USER root |
0.00B |
2024-06-27 20:51:13 |
ARG pplacer_version |
0.00B |
2024-06-27 20:51:13 |
ARG prodigal_version |
0.00B |
2024-06-27 20:51:13 |
ARG ncbi_crisper_version |
0.00B |
2024-06-27 20:51:13 |
ARG trnascan_version |
0.00B |
2024-06-27 20:51:13 |
ARG libdir |
0.00B |
2024-06-27 20:51:13 |
ARG bindir |
0.00B |
2024-06-27 20:51:13 |
ARG version |
0.00B |
2024-05-28 22:35:32 |
CMD ["/bin/bash"] |
189.42MB |
2024-05-28 22:35:32 |
ADD almalinux-8-default-amd64.tar.xz / # buildkit |