docker.io/pkharchenkolab/numbat-rbase:v1.4.2 linux/amd64

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2  docker.io/pkharchenkolab/numbat-rbase:v1.4.2

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2  docker.io/pkharchenkolab/numbat-rbase:v1.4.2

Shell快速替换命令

sed -i 's#pkharchenkolab/numbat-rbase:v1.4.2#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2 && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2  docker.io/pkharchenkolab/numbat-rbase:v1.4.2'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2 && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/pkharchenkolab/numbat-rbase:v1.4.2  docker.io/pkharchenkolab/numbat-rbase:v1.4.2'

镜像构建历史

# 2024-09-20 23:24:02  0.00B 设置工作目录为/numbat
WORKDIR /numbat
                        
# 2024-09-20 23:24:02  458.65MB 执行命令并创建新的镜像层
RUN /bin/sh -c wget -q https://storage.googleapis.com/broad-alkesgroup-public/Eagle/downloads/Eagle_v2.4.1.tar.gz && cd .. && tar -xvzf Eagle_v2.4.1.tar.gz && cd /Eagle_v2.4.1 && cp eagle /usr/bin # buildkit
                        
# 2024-09-20 23:23:54  4.84MB 执行命令并创建新的镜像层
RUN /bin/sh -c git clone https://github.com/single-cell-genetics/cellsnp-lite.git && cd cellsnp-lite &&   autoreconf -iv && ./configure && make && sudo make install # buildkit
                        
# 2024-09-20 23:23:48  19.52GB 执行命令并创建新的镜像层
RUN /bin/sh -c cd /data && wget -q http://pklab.med.harvard.edu/teng/data/1000G_hg38.zip && unzip 1000G_hg38.zip # buildkit
                        
# 2024-09-20 23:18:31  350.56MB 执行命令并创建新的镜像层
RUN /bin/sh -c cd /data && wget -q https://sourceforge.net/projects/cellsnp/files/SNPlist/genome1K.phase3.SNP_AF5e2.chr1toX.hg38.vcf.gz && gzip -d genome1K.phase3.SNP_AF5e2.chr1toX.hg38.vcf.gz # buildkit
                        
# 2024-09-20 23:18:21  0.00B 执行命令并创建新的镜像层
RUN /bin/sh -c mkdir data # buildkit
                        
# 2024-09-20 23:18:20  9.50KB 执行命令并创建新的镜像层
RUN /bin/sh -c chmod 777 /numbat/inst/bin/pileup_and_phase.R # buildkit
                        
# 2024-09-20 23:18:20  0.00B 执行命令并创建新的镜像层
RUN /bin/sh -c mkdir -p /tmp && chmod 777 /tmp # buildkit
                        
# 2024-09-20 23:18:20  435.89MB 执行命令并创建新的镜像层
RUN /bin/sh -c git clone https://github.com/kharchenkolab/numbat.git # buildkit
                        
# 2024-09-20 23:18:13  260.99MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'devtools::install_github("kharchenkolab/numbat", dependencies=TRUE)' # buildkit
                        
# 2024-09-20 23:06:44  61.75MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'devtools::install_github("YuLab-SMU/ggtree", dependencies=TRUE)' # buildkit
                        
# 2024-09-20 23:04:08  77.02MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'chooseCRANmirror(ind=42); install.packages("devtools")' # buildkit
                        
# 2024-09-20 22:58:48  57.99MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'chooseCRANmirror(ind=42); install.packages("pkgdown")' # buildkit
                        
# 2024-09-20 22:54:05  49.44MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'chooseCRANmirror(ind=42); install.packages("ragg")' # buildkit
                        
# 2024-09-20 22:51:10  1.03MB 执行命令并创建新的镜像层
RUN /bin/sh -c R -e 'chooseCRANmirror(ind=42); install.packages("BiocManager")' # buildkit
                        
# 2024-09-20 22:51:01  129.35MB 执行命令并创建新的镜像层
RUN /bin/sh -c cd /usr/bin &&   wget https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2 &&   tar -vxjf htslib-1.15.1.tar.bz2 && cd htslib-1.15.1 && make && sudo make install # buildkit
                        
# 2024-09-20 22:50:07  439.06MB 执行命令并创建新的镜像层
RUN /bin/sh -c apt-get update --yes && apt-get install --yes build-essential   libcurl4-gnutls-dev libxml2-dev libssl-dev libbz2-dev zlib1g-dev   libfontconfig1-dev libharfbuzz-dev libfribidi-dev   libncurses5-dev libncursesw5-dev liblzma-dev libgit2-dev   libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev   libglpk-dev git autoconf gettext libtool automake    samtools sudo # buildkit
                        
# 2024-09-20 22:50:07  0.00B 添加元数据标签
LABEL authors=Evan Biederstedt <evan.biederstedt@gmail.com>, Teng Gao <tgaoteng@gmail.com> version.image=0.1.3 version.pagoda2=0.1.3 description=r-base image to run numbat with R
                        
# 2023-10-12 11:13:19  0.00B 
/bin/sh -c #(nop)  CMD ["R"]
                        
# 2023-10-12 11:13:17  638.42MB 
/bin/sh -c apt-get update         && apt-get install -y --no-install-recommends                 libopenblas0-pthread 		littler                 r-cran-docopt                 r-cran-littler 		r-base=${R_BASE_VERSION}-* 		r-base-dev=${R_BASE_VERSION}-*                 r-base-core=${R_BASE_VERSION}-* 		r-recommended=${R_BASE_VERSION}-* 	&& chown root:staff "/usr/local/lib/R/site-library" 	&& chmod g+ws "/usr/local/lib/R/site-library" 	&& ln -s /usr/lib/R/site-library/littler/examples/install.r /usr/local/bin/install.r 	&& ln -s /usr/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r 	&& ln -s /usr/lib/R/site-library/littler/examples/installBioc.r /usr/local/bin/installBioc.r 	&& ln -s /usr/lib/R/site-library/littler/examples/installDeps.r /usr/local/bin/installDeps.r 	&& ln -s /usr/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r 	&& ln -s /usr/lib/R/site-library/littler/examples/testInstalled.r /usr/local/bin/testInstalled.r 	&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds 	&& rm -rf /var/lib/apt/lists/*
                        
# 2023-10-12 11:12:17  0.00B 
/bin/sh -c #(nop)  ENV R_BASE_VERSION=4.3.1
                        
# 2023-10-12 11:12:17  108.00B 
/bin/sh -c echo "deb http://http.debian.net/debian sid main" > /etc/apt/sources.list.d/debian-unstable.list         && echo 'APT::Default-Release "testing";' > /etc/apt/apt.conf.d/default         && echo 'APT::Install-Recommends "false";' > /etc/apt/apt.conf.d/90local-no-recommends
                        
# 2023-10-12 11:12:16  0.00B 
/bin/sh -c #(nop)  ENV LANG=en_US.UTF-8
                        
# 2023-10-12 11:12:16  0.00B 
/bin/sh -c #(nop)  ENV LC_ALL=en_US.UTF-8
                        
# 2023-10-12 11:12:16  3.06MB 
/bin/sh -c echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen 	&& locale-gen en_US.utf8 	&& /usr/sbin/update-locale LANG=en_US.UTF-8
                        
# 2023-10-12 11:12:14  52.85MB 
/bin/sh -c apt-get update 	&& apt-get install -y --no-install-recommends 		ed 		less 		locales 		vim-tiny 		wget 		ca-certificates 		fonts-texgyre 	&& rm -rf /var/lib/apt/lists/*
                        
# 2023-10-12 11:12:03  8.95KB 
/bin/sh -c useradd -s /bin/bash -m docker 	&& usermod -a -G staff docker
                        
# 2023-10-12 11:12:02  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker org.opencontainers.image.vendor=Rocker Project org.opencontainers.image.authors=Dirk Eddelbuettel <edd@debian.org>
                        
# 2023-10-12 02:37:10  0.00B 
/bin/sh -c #(nop)  CMD ["bash"]
                        
# 2023-10-12 02:37:09  116.34MB 
/bin/sh -c #(nop) ADD file:21d38a28e0614f04476d0dca2e0eb55defa5f216a30c05c084c97d6d1fa90e30 in / 
                        
                    

镜像信息

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    "Created": "2024-09-20T15:24:02.180432614Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "LC_ALL=en_US.UTF-8",
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        "Cmd": [
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        "Image": "",
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        "Labels": {
            "authors": "Evan Biederstedt \u003cevan.biederstedt@gmail.com\u003e, Teng Gao \u003ctgaoteng@gmail.com\u003e",
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            "org.opencontainers.image.description": "Haplotype-aware CNV analysis from single-cell RNA-seq",
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            "org.opencontainers.image.source": "https://github.com/kharchenkolab/numbat",
            "org.opencontainers.image.title": "numbat",
            "org.opencontainers.image.url": "https://github.com/kharchenkolab/numbat",
            "org.opencontainers.image.vendor": "Rocker Project",
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