docker.io/staphb/vadr:1.6.3-hav-flu2 linux/amd64

docker.io/staphb/vadr:1.6.3-hav-flu2 - 国内下载镜像源 浏览次数:39

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源镜像 docker.io/staphb/vadr:1.6.3-hav-flu2
国内镜像 swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2
镜像ID sha256:b3180dc924e6f218409a83e5c9ea0e881bff09729aea4fdc3db64f8f42e82ef0
镜像TAG 1.6.3-hav-flu2
大小 6.49GB
镜像源 docker.io
项目信息 Docker-Hub主页 🚀项目TAG 🚀
CMD /bin/bash
启动入口
工作目录 /data
OS/平台 linux/amd64
浏览量 39 次
贡献者
镜像创建 2024-04-09T17:41:02.047502727Z
同步时间 2025-04-29 17:13
更新时间 2025-06-02 18:03
环境变量
PATH=/opt/vadr/vadr:/opt/vadr/vadr/miniscripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin VADR_VERSION=1.6.3 VADR_SARSCOV2_MODELS_VERSION=1.3-2 VADR_MPXV_MODELS_VERSION=1.4.2-1 VADR_RSV_MODELS_VER=1.5-2 VADR_FLU_MODELS_VER=1.6.3-2 VADR_HAV_MODELS_VER=1.0.0 LC_ALL=C VADRINSTALLDIR=/opt/vadr VADRSCRIPTSDIR=/opt/vadr/vadr VADRMINISCRIPTSDIR=/opt/vadr/vadr/miniscripts VADRMODELDIR=/opt/vadr/vadr-models VADRINFERNALDIR=/opt/vadr/infernal/binaries VADREASELDIR=/opt/vadr/infernal/binaries VADRHMMERDIR=/opt/vadr/infernal/binaries VADRBIOEASELDIR=/opt/vadr/Bio-Easel VADRSEQUIPDIR=/opt/vadr/sequip VADRBLASTDIR=/opt/vadr/ncbi-blast/bin VADRFASTADIR=/opt/vadr/fasta/bin VADRMINIMAP2DIR=/opt/vadr/minimap2 PERL5LIB=/opt/vadr/vadr:/opt/vadr/sequip:/opt/vadr/Bio-Easel/blib/lib:/opt/vadr/Bio-Easel/blib/arch:
镜像标签
ubuntu:focal: base.image Classification and annotation of viral sequences based on RefSeq annotation: description 1: dockerfile.version https://github.com/ncbi/vadr/blob/master/LICENSE: license Anders Goncalves da Silva: maintainer andersgs@gmail.com: maintainer.email Curtis Kapsak: maintainer2 curtis.kapsak@theiagen.com: maintainer2.email Ines Mendes: maintainer3 ines.mendes@theiagen.com: maintainer3.email 2024-04-09T17:45:10.145Z: org.opencontainers.image.created :package: :whale: Dockerfiles and documentation on tools for public health bioinformatics: org.opencontainers.image.description GPL-3.0: org.opencontainers.image.licenses ubuntu: org.opencontainers.image.ref.name e941643e5e2f57e638f9f8524af3dbb49acefd91: org.opencontainers.image.revision https://github.com/StaPH-B/docker-builds: org.opencontainers.image.source docker-builds: org.opencontainers.image.title https://github.com/StaPH-B/docker-builds: org.opencontainers.image.url master: org.opencontainers.image.version VADR: software 1.6.3: software.version https://github.com/ncbi/vadr: website

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2  docker.io/staphb/vadr:1.6.3-hav-flu2

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2  docker.io/staphb/vadr:1.6.3-hav-flu2

Shell快速替换命令

sed -i 's#staphb/vadr:1.6.3-hav-flu2#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2 && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2  docker.io/staphb/vadr:1.6.3-hav-flu2'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2 && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/staphb/vadr:1.6.3-hav-flu2  docker.io/staphb/vadr:1.6.3-hav-flu2'

镜像构建历史


# 2024-04-10 01:41:02  0.00B 设置工作目录为/data
WORKDIR /data
                        
# 2024-04-10 01:41:02  13.95MB 执行命令并创建新的镜像层
RUN /bin/sh -c wget https://github.com/theiagen/VADR_models/archive/refs/tags/v${VADR_HAV_MODELS_VER}.tar.gz &&  tar -xf v${VADR_HAV_MODELS_VER}.tar.gz &&  rm -v v${VADR_HAV_MODELS_VER}.tar.gz &&  cp -nvr /VADR_models-${VADR_HAV_MODELS_VER}/hav/* ${VADRMODELDIR} &&  rm -rf /VADR_models-${VADR_HAV_MODELS_VER} # buildkit
                        
# 2024-04-10 01:41:01  455.90MB 执行命令并创建新的镜像层
RUN /bin/sh -c wget https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/flu/${VADR_FLU_MODELS_VER}/vadr-models-flu-${VADR_FLU_MODELS_VER}.tar.gz &&  tar -xf /vadr-models-flu-${VADR_FLU_MODELS_VER}.tar.gz &&  rm -v /vadr-models-flu-${VADR_FLU_MODELS_VER}.tar.gz &&  cp -nvr /vadr-models-flu-${VADR_FLU_MODELS_VER}/* ${VADRMODELDIR} &&  rm -rfv /vadr-models-flu-${VADR_FLU_MODELS_VER} # buildkit
                        
# 2024-04-10 01:40:57  54.78MB 执行命令并创建新的镜像层
RUN /bin/sh -c wget https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/rsv/${VADR_RSV_MODELS_VER}/vadr-models-rsv-${VADR_RSV_MODELS_VER}.tar.gz &&  tar -xf /vadr-models-rsv-${VADR_RSV_MODELS_VER}.tar.gz &&  rm -v /vadr-models-rsv-${VADR_RSV_MODELS_VER}.tar.gz &&  cp -nvr /vadr-models-rsv-${VADR_RSV_MODELS_VER}/* ${VADRMODELDIR} &&  rm -rfv /vadr-models-rsv-${VADR_RSV_MODELS_VER} # buildkit
                        
# 2024-04-10 01:40:56  944.10MB 执行命令并创建新的镜像层
RUN /bin/sh -c wget -O vadr-models-sarscov2.tar.gz https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/sarscov2/${VADR_SARSCOV2_MODELS_VERSION}/vadr-models-sarscov2-${VADR_SARSCOV2_MODELS_VERSION}.tar.gz &&  wget -O vadr-models-mpxv.tar.gz https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/mpxv/${VADR_MPXV_MODELS_VERSION}/vadr-models-mpxv-${VADR_MPXV_MODELS_VERSION}.tar.gz &&  tar -xf vadr-models-sarscov2.tar.gz &&  tar -xf vadr-models-mpxv.tar.gz &&  mkdir -vp ${VADRMODELDIR} &&  cp -nv /vadr-models-sarscov2-${VADR_SARSCOV2_MODELS_VERSION}/* ${VADRMODELDIR} &&  cp -nv /vadr-models-mpxv-${VADR_MPXV_MODELS_VERSION}/* ${VADRMODELDIR} &&  rm -rf /vadr-models-sarscov2* &&  rm -rf /vadr-models-mpxv* &&  cp -nv ${VADRINSTALLDIR}/vadr-models-calici/* ${VADRMODELDIR} &&  rm -rf ${VADRINSTALLDIR}/vadr-models-calici/ # buildkit
                        
# 2024-04-10 01:40:52  4.69GB 执行命令并创建新的镜像层
RUN /bin/sh -c mkdir -p ${VADRINSTALLDIR} &&  cd ${VADRINSTALLDIR} &&  wget https://github.com/ncbi/vadr/archive/refs/tags/vadr-${VADR_VERSION}.tar.gz &&  mkdir vadr-${VADR_VERSION} && tar -xzf vadr-${VADR_VERSION}.tar.gz -C vadr-${VADR_VERSION} --strip-components 1 &&  rm vadr-${VADR_VERSION}.tar.gz &&  bash vadr-${VADR_VERSION}/vadr-install.sh linux &&  rm -rf vadr-${VADR_VERSION}/ &&  mkdir /data # buildkit
                        
# 2024-04-10 01:37:46  258.45MB 执行命令并创建新的镜像层
RUN /bin/sh -c apt-get update && apt-get install -y --no-install-recommends  wget  ca-certificates  perl  curl  unzip  build-essential  autoconf  libinline-c-perl  liblwp-protocol-https-perl  zip  unzip  procps  zlib1g-dev &&  apt-get autoclean && rm -rf /var/lib/apt/lists/* # buildkit
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer3.email=ines.mendes@theiagen.com
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer3=Ines Mendes
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer2.email=curtis.kapsak@theiagen.com
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer2=Curtis Kapsak
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer.email=andersgs@gmail.com
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL maintainer=Anders Goncalves da Silva
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL license=https://github.com/ncbi/vadr/blob/master/LICENSE
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL website=https://github.com/ncbi/vadr
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL description=Classification and annotation of viral sequences based on RefSeq annotation
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL software.version=1.6.3
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL software=VADR
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL dockerfile.version=1
                        
# 2024-04-10 01:37:46  0.00B 添加元数据标签
LABEL base.image=ubuntu:focal
                        
# 2024-04-10 01:37:46  0.00B 设置环境变量 PERL5LIB PATH
ENV PERL5LIB=/opt/vadr/vadr:/opt/vadr/sequip:/opt/vadr/Bio-Easel/blib/lib:/opt/vadr/Bio-Easel/blib/arch: PATH=/opt/vadr/vadr:/opt/vadr/vadr/miniscripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2024-04-10 01:37:46  0.00B 设置环境变量 VADRSCRIPTSDIR VADRMINISCRIPTSDIR VADRMODELDIR VADRINFERNALDIR VADREASELDIR VADRHMMERDIR VADRBIOEASELDIR VADRSEQUIPDIR VADRBLASTDIR VADRFASTADIR VADRMINIMAP2DIR
ENV VADRSCRIPTSDIR=/opt/vadr/vadr VADRMINISCRIPTSDIR=/opt/vadr/vadr/miniscripts VADRMODELDIR=/opt/vadr/vadr-models VADRINFERNALDIR=/opt/vadr/infernal/binaries VADREASELDIR=/opt/vadr/infernal/binaries VADRHMMERDIR=/opt/vadr/infernal/binaries VADRBIOEASELDIR=/opt/vadr/Bio-Easel VADRSEQUIPDIR=/opt/vadr/sequip VADRBLASTDIR=/opt/vadr/ncbi-blast/bin VADRFASTADIR=/opt/vadr/fasta/bin VADRMINIMAP2DIR=/opt/vadr/minimap2
                        
# 2024-04-10 01:37:46  0.00B 设置环境变量 VADR_VERSION VADR_SARSCOV2_MODELS_VERSION VADR_MPXV_MODELS_VERSION VADR_RSV_MODELS_VER VADR_FLU_MODELS_VER VADR_HAV_MODELS_VER LC_ALL VADRINSTALLDIR
ENV VADR_VERSION=1.6.3 VADR_SARSCOV2_MODELS_VERSION=1.3-2 VADR_MPXV_MODELS_VERSION=1.4.2-1 VADR_RSV_MODELS_VER=1.5-2 VADR_FLU_MODELS_VER=1.6.3-2 VADR_HAV_MODELS_VER=1.0.0 LC_ALL=C VADRINSTALLDIR=/opt/vadr
                        
# 2024-02-17 05:32:52  0.00B 
/bin/sh -c #(nop)  CMD ["/bin/bash"]
                        
# 2024-02-17 05:32:52  72.81MB 
/bin/sh -c #(nop) ADD file:a25798f31219000d6a82d2c9258743926b1a400530d12dbb1eadf2c2519f9888 in / 
                        
# 2024-02-17 05:32:49  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.version=20.04
                        
# 2024-02-17 05:32:49  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.ref.name=ubuntu
                        
# 2024-02-17 05:32:49  0.00B 
/bin/sh -c #(nop)  ARG LAUNCHPAD_BUILD_ARCH
                        
# 2024-02-17 05:32:49  0.00B 
/bin/sh -c #(nop)  ARG RELEASE
                        
                    

镜像信息

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    "Id": "sha256:b3180dc924e6f218409a83e5c9ea0e881bff09729aea4fdc3db64f8f42e82ef0",
    "RepoTags": [
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    "Comment": "buildkit.dockerfile.v0",
    "Created": "2024-04-09T17:41:02.047502727Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
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        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/opt/vadr/vadr:/opt/vadr/vadr/miniscripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "VADR_VERSION=1.6.3",
            "VADR_SARSCOV2_MODELS_VERSION=1.3-2",
            "VADR_MPXV_MODELS_VERSION=1.4.2-1",
            "VADR_RSV_MODELS_VER=1.5-2",
            "VADR_FLU_MODELS_VER=1.6.3-2",
            "VADR_HAV_MODELS_VER=1.0.0",
            "LC_ALL=C",
            "VADRINSTALLDIR=/opt/vadr",
            "VADRSCRIPTSDIR=/opt/vadr/vadr",
            "VADRMINISCRIPTSDIR=/opt/vadr/vadr/miniscripts",
            "VADRMODELDIR=/opt/vadr/vadr-models",
            "VADRINFERNALDIR=/opt/vadr/infernal/binaries",
            "VADREASELDIR=/opt/vadr/infernal/binaries",
            "VADRHMMERDIR=/opt/vadr/infernal/binaries",
            "VADRBIOEASELDIR=/opt/vadr/Bio-Easel",
            "VADRSEQUIPDIR=/opt/vadr/sequip",
            "VADRBLASTDIR=/opt/vadr/ncbi-blast/bin",
            "VADRFASTADIR=/opt/vadr/fasta/bin",
            "VADRMINIMAP2DIR=/opt/vadr/minimap2",
            "PERL5LIB=/opt/vadr/vadr:/opt/vadr/sequip:/opt/vadr/Bio-Easel/blib/lib:/opt/vadr/Bio-Easel/blib/arch:"
        ],
        "Cmd": [
            "/bin/bash"
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        "Image": "",
        "Volumes": null,
        "WorkingDir": "/data",
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        "Labels": {
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            "description": "Classification and annotation of viral sequences based on RefSeq annotation",
            "dockerfile.version": "1",
            "license": "https://github.com/ncbi/vadr/blob/master/LICENSE",
            "maintainer": "Anders Goncalves da Silva",
            "maintainer.email": "andersgs@gmail.com",
            "maintainer2": "Curtis Kapsak",
            "maintainer2.email": "curtis.kapsak@theiagen.com",
            "maintainer3": "Ines Mendes",
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            "org.opencontainers.image.url": "https://github.com/StaPH-B/docker-builds",
            "org.opencontainers.image.version": "master",
            "software": "VADR",
            "software.version": "1.6.3",
            "website": "https://github.com/ncbi/vadr"
        }
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    "Architecture": "amd64",
    "Os": "linux",
    "Size": 6487825966,
    "GraphDriver": {
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        "LastTagTime": "2025-04-29T17:11:22.586604048+08:00"
    }
}

更多版本

docker.io/staphb/vadr:1.6.3-hav-flu2

linux/amd64 docker.io6.49GB2025-04-29 17:13
38