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docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d
linux/amd64 docker.io

这个Docker镜像包含cogent3库,cogent3是一个用于生物信息学研究的Python工具包,支持序列分析、多序列比对、系统发育树构建等功能,方便用户快速部署并使用cogent3进行相关生物信息学分析任务。

8
浏览次数
2.98GB
镜像大小
源镜像
docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d
国内镜像
swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d
镜像ID
sha256:97d469fac0987392bb0118ee841c68d733a94c51bec92452ef3ac288ae62562d
镜像 TAG
2013-5f91b9d
镜像大小
2.98GB
平台架构
linux/amd64
镜像源
docker.io
CMD
python3
启动入口
工作目录
/cogent3
OS/平台
linux/amd64
镜像创建
2026-04-21T12:19:48.763914085Z
同步时间
2026-07-06 23:54
浏览量
8 次
贡献者
⚙️ 环境变量 13
KeyValue
GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D 0
PYTHON_VERSION=3.10.19 1
PYTHON_SHA256=c8f4a596572201d81dd7df91f70e177e19a70f1d489968b54b5fbbf29a97c076 2
TZ=Etc/UTC 3
PIP_CACHE_DIR=/workspace/.cache/pip 4
PYTHONPYCACHEPREFIX=/workspace/.cache/pycache 5
XDG_CACHE_HOME=/workspace/.cache 6
XDG_CONFIG_HOME=/workspace/.config 7
XDG_DATA_HOME=/workspace/.local/share 8
LANG=C.UTF-8 9
LC_ALL=C.UTF-8 10
NO_CONDA=1 11
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12
🏷️ 镜像标签 1
KeyValue
1.38.1 io.buildah.version
🛡️ 镜像安全扫描
debian 13.2 Trivy 2026-07-06 23:55 查看完整报告
984
低危 LOW
2121
中危 MEDIUM
473
高危 HIGH
19
严重 CRITICAL
受影响目标 (4)
docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d (debian 13.2) debian Conda conda-pkg Node.js node-pkg Python python-pkg

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d  docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d  docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d

Shell快速替换命令

sed -i 's#swerebenchv2/cogent3-cogent3:2013-5f91b9d#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d  docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d  docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d'

镜像构建历史


# 2026-04-21 20:19:51  0.00B 
/bin/sh
                        
# 2026-02-22 17:20:44  858.15MB 
/bin/sh -c #(nop) COPY file:169d240cc6a3fb10a10a46eff3933e052351e722a3636f6e1986b475e1ffaa6a in /swebench_matterhorn/swebench_instance.json 
                        
# 2026-02-22 17:20:39  0.00B 
/bin/sh -c #(nop) WORKDIR /cogent3
                        
# 2026-02-22 17:20:39  0.00B 
/bin/sh -c <<-DOCKER_RUN_EOF
set -eux;
    git clone -o origin https://github.com/cogent3/cogent3 /cogent3;
    chmod -R 777 /cogent3;
    cd /cogent3;
    git reset --hard 5f91b9dc05872a7f9e5aff9736d18b497f9bb7a1;
    ( pip install -q -e .[test] ) || true;
    # Keep only the checked-out commit and remove refs/history that can point
    # to newer commits.
    git checkout --detach 5f91b9dc05872a7f9e5aff9736d18b497f9bb7a1;
    for r in $(git remote); do
        git remote remove "$r";
    done;
    git for-each-ref --format='delete %(refname)' refs/heads refs/remotes refs/tags | git update-ref --stdin;
    git reflog expire --expire=now --expire-unreachable=now --all;
    git gc --prune=now;
                        
# 2026-02-22 17:20:14  0.00B 
/bin/sh -c #(nop) ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:$PATH
                        
# 2026-02-22 17:20:02  1.53GB 
/bin/sh -c #(nop) ENV NO_CONDA=1
                        
# 2026-02-22 17:19:55  0.00B 
/bin/sh -c mkdir -p /swebench_matterhorn     && tar -xzf /swebench_matterhorn_repo.tar.gz -C /swebench_matterhorn     && rm /swebench_matterhorn_repo.tar.gz     && mkdir -p /opt/conda/envs/swebench_matterhorn     && tar -xzf /swebench_matterhorn_env.tar.gz -C /opt/conda/envs/swebench_matterhorn     && rm /swebench_matterhorn_env.tar.gz     && /opt/conda/envs/swebench_matterhorn/bin/conda-unpack
                        
# 2026-02-22 17:19:48  0.00B 
/bin/sh -c #(nop) COPY file:61604c43c292b48546055579c93885a922428ac04b5a3f2bd7c87a6a8208dbd4 in / 
                        
# 2026-02-22 17:19:47  0.00B 
/bin/sh -c #(nop) COPY file:38d2cec6c3688d3db2fdf6a899d279ccf0f0bf78f9acc300722c98b6d67c4b26 in / 
                        
# 2026-02-22 17:19:47  0.00B 
/bin/sh -c wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-py312_24.7.1-0-Linux-x86_64.sh -O ~/miniconda.sh &&     /bin/bash ~/miniconda.sh -b -p /opt/conda &&     rm ~/miniconda.sh &&     /opt/conda/bin/conda clean -tip &&     ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh &&     echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
                        
# 2026-02-22 17:19:39  0.00B 
/bin/sh -c apt-get update --fix-missing &&     apt-get install -y bzip2 ca-certificates wget git &&     apt-get clean &&     rm -rf /var/lib/apt/lists/*
                        
# 2026-02-22 17:19:36  0.00B 
/bin/sh -c #(nop) ENV PATH=/opt/conda/bin:$PATH
                        
# 2026-02-22 17:19:36  0.00B 
/bin/sh -c #(nop) ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
                        
# 2026-01-08 17:56:39  0.00B 设置工作目录为/workspace
WORKDIR /workspace
                        
# 2026-01-08 17:56:39  9.01KB 执行命令并创建新的镜像层
RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c adduser --disabled-password --gecos 'dog' nonroot # buildkit
                        
# 2026-01-08 17:56:38  35.83MB 执行命令并创建新的镜像层
RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c python -m pip install --upgrade pip setuptools wheel  && python -m pip install pytest # buildkit
                        
# 2026-01-08 17:56:14  0.00B 设置环境变量 PIP_CACHE_DIR PYTHONPYCACHEPREFIX XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME
ENV PIP_CACHE_DIR=/workspace/.cache/pip PYTHONPYCACHEPREFIX=/workspace/.cache/pycache XDG_CACHE_HOME=/workspace/.cache XDG_CONFIG_HOME=/workspace/.config XDG_DATA_HOME=/workspace/.local/share
                        
# 2026-01-08 17:56:14  437.62MB 执行命令并创建新的镜像层
RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c apt-get update && apt-get install -y --no-install-recommends     git     curl     wget     unzip     zip     ca-certificates     build-essential     pkg-config     cmake     gnupg     libssl-dev     zlib1g-dev     libffi-dev  && rm -rf /var/lib/apt/lists/* # buildkit
                        
# 2026-01-08 17:56:14  0.00B 设置环境变量 TZ
ENV TZ=Etc/UTC
                        
# 2026-01-08 17:56:14  0.00B 定义构建参数
ARG DEBIAN_FRONTEND=noninteractive
                        
# 2025-12-30 08:43:38  0.00B 设置默认要执行的命令
CMD ["python3"]
                        
# 2025-12-30 08:43:38  36.00B 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 	for src in idle3 pip3 pydoc3 python3 python3-config; do 		dst="$(echo "$src" | tr -d 3)"; 		[ -s "/usr/local/bin/$src" ]; 		[ ! -e "/usr/local/bin/$dst" ]; 		ln -svT "$src" "/usr/local/bin/$dst"; 	done # buildkit
                        
# 2025-12-30 08:43:38  39.44MB 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 		savedAptMark="$(apt-mark showmanual)"; 	apt-get update; 	apt-get install -y --no-install-recommends 		dpkg-dev 		gcc 		gnupg 		libbluetooth-dev 		libbz2-dev 		libc6-dev 		libdb-dev 		libffi-dev 		libgdbm-dev 		liblzma-dev 		libncursesw5-dev 		libreadline-dev 		libsqlite3-dev 		libssl-dev 		make 		tk-dev 		uuid-dev 		wget 		xz-utils 		zlib1g-dev 	; 		wget -O python.tar.xz "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz"; 	echo "$PYTHON_SHA256 *python.tar.xz" | sha256sum -c -; 	wget -O python.tar.xz.asc "https://www.python.org/ftp/python/${PYTHON_VERSION%%[a-z]*}/Python-$PYTHON_VERSION.tar.xz.asc"; 	GNUPGHOME="$(mktemp -d)"; export GNUPGHOME; 	gpg --batch --keyserver hkps://keys.openpgp.org --recv-keys "$GPG_KEY"; 	gpg --batch --verify python.tar.xz.asc python.tar.xz; 	gpgconf --kill all; 	rm -rf "$GNUPGHOME" python.tar.xz.asc; 	mkdir -p /usr/src/python; 	tar --extract --directory /usr/src/python --strip-components=1 --file python.tar.xz; 	rm python.tar.xz; 		cd /usr/src/python; 	gnuArch="$(dpkg-architecture --query DEB_BUILD_GNU_TYPE)"; 	./configure 		--build="$gnuArch" 		--enable-loadable-sqlite-extensions 		--enable-optimizations 		--enable-option-checking=fatal 		--enable-shared 		$(test "${gnuArch%%-*}" != 'riscv64' && echo '--with-lto') 		--with-ensurepip 	; 	nproc="$(nproc)"; 	EXTRA_CFLAGS="$(dpkg-buildflags --get CFLAGS)"; 	LDFLAGS="$(dpkg-buildflags --get LDFLAGS)"; 	LDFLAGS="${LDFLAGS:--Wl},--strip-all"; 	make -j "$nproc" 		"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" 		"LDFLAGS=${LDFLAGS:-}" 	; 	rm python; 	make -j "$nproc" 		"EXTRA_CFLAGS=${EXTRA_CFLAGS:-}" 		"LDFLAGS=${LDFLAGS:--Wl},-rpath='\$\$ORIGIN/../lib'" 		python 	; 	make install; 		cd /; 	rm -rf /usr/src/python; 		find /usr/local -depth 		\( 			\( -type d -a \( -name test -o -name tests -o -name idle_test \) \) 			-o \( -type f -a \( -name '*.pyc' -o -name '*.pyo' -o -name 'libpython*.a' \) \) 		\) -exec rm -rf '{}' + 	; 		ldconfig; 		apt-mark auto '.*' > /dev/null; 	apt-mark manual $savedAptMark; 	find /usr/local -type f -executable -not \( -name '*tkinter*' \) -exec ldd '{}' ';' 		| awk '/=>/ { so = $(NF-1); if (index(so, "/usr/local/") == 1) { next }; gsub("^/(usr/)?", "", so); printf "*%s\n", so }' 		| sort -u 		| xargs -rt dpkg-query --search 		| awk 'sub(":$", "", $1) { print $1 }' 		| sort -u 		| xargs -r apt-mark manual 	; 	apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; 	apt-get dist-clean; 		export PYTHONDONTWRITEBYTECODE=1; 	python3 --version; 		pip3 install 		--disable-pip-version-check 		--no-cache-dir 		--no-compile 		'setuptools==79.0.1' 		'wheel<0.46' 	; 	pip3 --version # buildkit
                        
# 2025-12-30 08:38:13  0.00B 设置环境变量 PYTHON_SHA256
ENV PYTHON_SHA256=c8f4a596572201d81dd7df91f70e177e19a70f1d489968b54b5fbbf29a97c076
                        
# 2025-12-30 08:38:13  0.00B 设置环境变量 PYTHON_VERSION
ENV PYTHON_VERSION=3.10.19
                        
# 2025-12-30 08:38:13  0.00B 设置环境变量 GPG_KEY
ENV GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D
                        
# 2025-12-30 08:38:13  3.81MB 执行命令并创建新的镜像层
RUN /bin/sh -c set -eux; 	apt-get update; 	apt-get install -y --no-install-recommends 		ca-certificates 		netbase 		tzdata 	; 	apt-get dist-clean # buildkit
                        
# 2025-12-30 08:38:13  0.00B 设置环境变量 LANG
ENV LANG=C.UTF-8
                        
# 2025-12-30 08:38:13  0.00B 设置环境变量 PATH
ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2025-12-29 08:00:00  78.62MB 
# debian.sh --arch 'amd64' out/ 'trixie' '@1766966400'
                        
                    

镜像信息

{
    "Id": "sha256:97d469fac0987392bb0118ee841c68d733a94c51bec92452ef3ac288ae62562d",
    "RepoTags": [
        "swerebenchv2/cogent3-cogent3:2013-5f91b9d",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d"
    ],
    "RepoDigests": [
        "swerebenchv2/cogent3-cogent3@sha256:0637e2f3f60bd4c1a9a4611e6911b0c006077730a3bfb8f3a5fd606181e075ab",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/swerebenchv2/cogent3-cogent3@sha256:10d465fdd0901364c139001e0279a1d1b2d0fbb178c731e59808ab5e2b37f812"
    ],
    "Parent": "",
    "Comment": "FROM docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d",
    "Created": "2026-04-21T12:19:48.763914085Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "ff57366f6a2e",
        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "GPG_KEY=A035C8C19219BA821ECEA86B64E628F8D684696D",
            "PYTHON_VERSION=3.10.19",
            "PYTHON_SHA256=c8f4a596572201d81dd7df91f70e177e19a70f1d489968b54b5fbbf29a97c076",
            "TZ=Etc/UTC",
            "PIP_CACHE_DIR=/workspace/.cache/pip",
            "PYTHONPYCACHEPREFIX=/workspace/.cache/pycache",
            "XDG_CACHE_HOME=/workspace/.cache",
            "XDG_CONFIG_HOME=/workspace/.config",
            "XDG_DATA_HOME=/workspace/.local/share",
            "LANG=C.UTF-8",
            "LC_ALL=C.UTF-8",
            "NO_CONDA=1",
            "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
        ],
        "Cmd": [
            "python3"
        ],
        "Image": "",
        "Volumes": null,
        "WorkingDir": "/cogent3",
        "Entrypoint": null,
        "OnBuild": [],
        "Labels": {
            "io.buildah.version": "1.38.1"
        }
    },
    "Architecture": "amd64",
    "Os": "linux",
    "Size": 2983555099,
    "GraphDriver": {
        "Data": {
            "LowerDir": "/var/lib/docker/overlay2/deb95198388e0216bd3535ba304cadfa4bb398dd4ec2b9a60968fcd6d11b24b9/diff:/var/lib/docker/overlay2/95ad40d4570ddbfb3ca4dfeaf164eda96c537f4807a4c9c33635b84b88f5d9e8/diff:/var/lib/docker/overlay2/e039f4b14553a853fe85f66398f864f35ae1a019be2b492356038741a7b0c7f1/diff:/var/lib/docker/overlay2/e8a32c7443248bc3d892f75806d369b5533949f6dd4819941b9d725a82a9097c/diff:/var/lib/docker/overlay2/2ceb57a5e9a7edf4307c0e2d498869618ecccfb555ae9d3c8ac6687fd6cf425d/diff:/var/lib/docker/overlay2/881b755a6dca8dec636ac35fecc160112de3c32d71d9f93b914f7a7030442ea1/diff:/var/lib/docker/overlay2/2591c60caf2295ea53abd2ee540a08b7ced59adaff1b5310c1e38216c7ee1210/diff:/var/lib/docker/overlay2/2902e1e7a91579023b843a7f8d41aab04e9ea2a9a04cd8a83655ff88b4a71481/diff:/var/lib/docker/overlay2/8adb8ef43e3c4294092a7b78d15129fe8392673d59bbde409d721b665aa17614/diff:/var/lib/docker/overlay2/71148dfdaf2e9c9f7e27fbf44131b8a53a02bc761eeba5f25b6ce679d9fae3ae/diff",
            "MergedDir": "/var/lib/docker/overlay2/2ef7993a26f447df6c8b4a3ede02232f6456cc8c3218911687226d8f6b3b0f11/merged",
            "UpperDir": "/var/lib/docker/overlay2/2ef7993a26f447df6c8b4a3ede02232f6456cc8c3218911687226d8f6b3b0f11/diff",
            "WorkDir": "/var/lib/docker/overlay2/2ef7993a26f447df6c8b4a3ede02232f6456cc8c3218911687226d8f6b3b0f11/work"
        },
        "Name": "overlay2"
    },
    "RootFS": {
        "Type": "layers",
        "Layers": [
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        ]
    },
    "Metadata": {
        "LastTagTime": "2026-07-06T23:51:21.966774186+08:00"
    }
}

更多版本

docker.io/swerebenchv2/cogent3-cogent3:2013-5f91b9d

linux/amd64 docker.io2.98GB2026-07-06 23:54
7
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