docker.io/trinityctat/starfusion:latest linux/amd64

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest  docker.io/trinityctat/starfusion:latest

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest  docker.io/trinityctat/starfusion:latest

Shell快速替换命令

sed -i 's#trinityctat/starfusion:latest#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest  docker.io/trinityctat/starfusion:latest'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest  docker.io/trinityctat/starfusion:latest'

镜像构建历史

# 2024-11-28 06:44:01  0.00B 
/bin/sh -c #(nop)  ENV PATH=/usr/local/src/STAR-Fusion:/usr/local/src/STAR-Fusion/FusionInspector:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2024-11-28 06:44:01  0.00B 
/bin/sh -c #(nop)  ENV STAR_FUSION_HOME=/usr/local/src/STAR-Fusion
                        
# 2024-11-28 06:43:59  409.31MB 
/bin/sh -c git clone https://github.com/STAR-Fusion/STAR-Fusion.git &&      cd STAR-Fusion &&      git checkout $STARF_CHECKOUT &&      git submodule init && git submodule update &&      cd FusionInspector &&      git submodule init && git submodule update && make
                        
# 2024-11-28 06:43:34  35.42MB 
/bin/sh -c apt-get update && apt-get install -y git
                        
# 2024-11-28 06:43:25  0.00B 
/bin/sh -c #(nop)  ENV STARF_CHECKOUT=9b20243b725d95a5699f6b8d787c9491d2938b9c
                        
# 2024-11-28 06:43:25  0.00B 
/bin/sh -c #(nop)  ENV STAR_FUSION_VERSION=1.14.0
                        
# 2024-11-28 06:43:25  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2024-11-28 06:43:25  0.00B 
/bin/sh -c #(nop)  ENV PICARD_HOME=/usr/local/src
                        
# 2024-11-28 06:43:25  16.60MB 
/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.20.3/picard.jar
                        
# 2024-11-28 06:43:23  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2024-11-28 06:43:23  20.01KB 
/bin/sh -c wget https://dfam.org/releases/Dfam_3.1/infrastructure/dfamscan.pl.gz &&      gunzip dfamscan.pl.gz &&      chmod 755 dfamscan.pl &&      mv dfamscan.pl $BIN/
                        
# 2024-11-28 06:43:21  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2024-11-28 06:43:21  123.81MB 
/bin/sh -c wget http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2-linux-intel-x86_64.tar.gz &&     tar xvf hmmer-3.1b2-linux-intel-x86_64.tar.gz &&         cp hmmer-3.1b2-linux-intel-x86_64/binaries/* /usr/local/bin/
                        
# 2024-11-28 06:43:18  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2024-11-28 06:43:11  1.74GB 
/bin/sh -c wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${BLAST_VERSION}/ncbi-blast-${BLAST_VERSION}+-x64-linux.tar.gz &&     tar xvf ncbi-blast-${BLAST_VERSION}+-x64-linux.tar.gz &&         cp ncbi-blast-${BLAST_VERSION}+/bin/* /usr/local/bin/
                        
# 2024-11-28 06:42:48  0.00B 
/bin/sh -c #(nop)  ENV BLAST_VERSION=2.9.0
                        
# 2024-11-28 06:42:48  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2024-11-28 06:42:48  3.05MB 
/bin/sh -c locale-gen en_US.UTF-8
                        
# 2024-11-28 06:42:45  53.35MB 
/bin/sh -c apt-get clean && apt-get update && apt-get install -y locales
                        
# 2024-11-28 06:42:26  0.00B 
/bin/sh -c #(nop)  MAINTAINER bhaas@broadinstitute.org
                        
# 2024-11-13 21:56:38  114.58MB 
/bin/sh -c git clone --recursive https://github.com/FusionInspector/FusionInspector.git &&     cd FusionInspector/ &&     git checkout ${FI_HASH} &&     git submodule init && git submodule update &&     make &&     mv * $BIN
                        
# 2024-11-13 21:56:20  0.00B 
/bin/sh -c #(nop)  ENV FI_HASH=91220a1abe6500fa953b3909d4dfdf79c41bd2c0
                        
# 2024-11-13 21:56:20  0.00B 
/bin/sh -c #(nop)  ENV FI_VERSION=2.10.0
                        
# 2023-10-28 00:36:31  85.88MB 
/bin/sh -c pip install numpy
                        
# 2023-10-27 09:42:45  2.14KB 
/bin/sh -c #(nop) COPY file:d854d70839475db0b0198ac8f3b5035f460e9e6e25693a16f6b6d9bd3da0a79b in /usr/local/bin/ 
                        
# 2023-10-27 09:42:43  272.71MB 
/bin/sh -c wget https://github.com/COMBINE-lab/salmon/releases/download/v${SALMON_VERSION}/Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz &&     tar xvf Salmon-${SALMON_VERSION}_linux_x86_64.tar.gz &&     ln -sf $SRC/salmon-${SALMON_VERSION}_linux_x86_64/bin/salmon $BIN/.
                        
# 2023-10-27 09:42:37  0.00B 
/bin/sh -c #(nop)  ENV SALMON_VERSION=1.5.2
                        
# 2023-10-27 09:42:37  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:42:37  47.99MB 
/bin/sh -c STAR_URL="https://github.com/alexdobin/STAR/archive/${STAR_VERSION}.tar.gz" &&    wget -P $SRC $STAR_URL &&    tar -xvf $SRC/${STAR_VERSION}.tar.gz -C $SRC &&     mv $SRC/STAR-${STAR_VERSION}/bin/Linux_x86_64_static/STAR /usr/local/bin
                        
# 2023-10-27 09:42:32  0.00B 
/bin/sh -c #(nop)  ENV STAR_VERSION=2.7.11a
                        
# 2023-10-27 09:42:32  14.80MB 
/bin/sh -c curl -L https://github.com/attractivechaos/k8/releases/download/v0.2.4/k8-0.2.4.tar.bz2 | tar -jxf - &&     cp k8-0.2.4/k8-`uname -s` $BIN/k8
                        
# 2023-10-27 09:42:30  6.34MB 
/bin/sh -c curl -L https://github.com/lh3/minimap2/releases/download/v2.26/minimap2-2.26_x64-linux.tar.bz2 | tar -jxvf - &&     mv ./minimap2-2.26_x64-linux/minimap2 $BIN/
                        
# 2023-10-27 09:42:28  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:42:28  0.00B 
/bin/sh -c #(nop)  ENV PICARD_HOME=/usr/local/src
                        
# 2023-10-27 09:42:28  16.60MB 
/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.20.3/picard.jar
                        
# 2023-10-27 09:42:26  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:42:26  23.43MB 
/bin/sh -c wget https://github.com/COMBINE-lab/salmon/releases/download/v0.9.1/Salmon-0.9.1_linux_x86_64.tar.gz &&     tar xvf Salmon-0.9.1_linux_x86_64.tar.gz &&     ln -s $SRC/Salmon-latest_linux_x86_64/bin/salmon $BIN/.
                        
# 2023-10-27 09:42:25  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:42:24  17.34MB 
/bin/sh -c wget https://github.com/gmarcais/Jellyfish/releases/download/v2.2.7/jellyfish-2.2.7.tar.gz &&     tar xvf jellyfish-2.2.7.tar.gz &&     cd jellyfish-2.2.7/ &&     ./configure && make && make install
                        
# 2023-10-27 09:41:50  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:41:49  133.59MB 
/bin/sh -c wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.3.3.1/bowtie2-2.3.3.1-linux-x86_64.zip/download -O bowtie2-2.3.3.1-linux-x86_64.zip &&     unzip bowtie2-2.3.3.1-linux-x86_64.zip &&     mv bowtie2-2.3.3.1-linux-x86_64/bowtie2* $BIN &&     rm *.zip &&     rm -r bowtie2-2.3.3.1-linux-x86_64
                        
# 2023-10-27 09:41:32  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 09:41:32  0.00B 
/bin/sh -c #(nop)  ENV TRINITY_HOME=/usr/local/src/trinityrnaseq-v2.15.1
                        
# 2023-10-27 09:41:30  364.57MB 
/bin/sh -c TRINITY_URL="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v${TRINITY_VERSION}/trinityrnaseq-v${TRINITY_VERSION}.FULL.tar.gz" &&    cd $SRC &&    wget $TRINITY_URL &&    tar xvf trinityrnaseq-v${TRINITY_VERSION}.FULL.tar.gz &&    cd trinityrnaseq-v${TRINITY_VERSION} && make
                        
# 2023-10-27 09:39:18  0.00B 
/bin/sh -c #(nop)  ENV TRINITY_VERSION=2.15.1
                        
# 2023-10-27 09:39:17  30.01MB 
/bin/sh -c apt-get install -y cmake apt-utils && apt-get clean
                        
# 2023-10-27 09:39:09  172.06MB 
/bin/sh -c SAMTOOLS_URL="https://github.com/samtools/samtools/releases/download/${SAMTOOLS_VERSION}/samtools-${SAMTOOLS_VERSION}.tar.bz2" &&    cd $SRC &&    wget $SAMTOOLS_URL &&    tar xvf samtools-${SAMTOOLS_VERSION}.tar.bz2 &&    cd samtools-${SAMTOOLS_VERSION}/htslib-${SAMTOOLS_VERSION} && ./configure && make && make install &&    cd ../ && ./configure --without-curses && make && make install
                        
# 2023-10-27 09:37:14  0.00B 
/bin/sh -c #(nop)  ENV SAMTOOLS_VERSION=1.9
                        
# 2023-10-27 09:37:14  2.26MB 
/bin/sh -c cpanm install JSON::XS.pm
                        
# 2023-10-27 09:37:04  148.64KB 
/bin/sh -c cpanm install Carp::Assert
                        
# 2023-10-27 09:37:01  2.55MB 
/bin/sh -c cpanm install URI::Escape
                        
# 2023-10-27 09:36:42  2.89MB 
/bin/sh -c cpanm install DB_File
                        
# 2023-10-27 09:36:36  6.37MB 
/bin/sh -c cpanm install Set::IntervalTree
                        
# 2023-10-27 09:34:51  591.03KB 
/bin/sh -c cpanm install PerlIO::gzip
                        
# 2023-10-27 09:34:46  3.83MB 
/bin/sh -c curl -L https://cpanmin.us | perl - App::cpanminus
                        
# 2023-10-27 09:34:41  75.60MB 
/bin/sh -c R -e 'BiocManager::install("ranger")'
                        
# 2023-10-27 09:31:26  2.06MB 
/bin/sh -c R -e 'BiocManager::install("cowplot")'
                        
# 2023-10-27 09:31:13  220.44MB 
/bin/sh -c R -e 'BiocManager::install("tidyverse")'
                        
# 2023-10-27 09:09:41  3.00MB 
/bin/sh -c R -e 'BiocManager::install("argparse")'
                        
# 2023-10-27 09:09:07  1.01MB 
/bin/sh -c R -e 'install.packages("BiocManager", repos="http://cran.us.r-project.org")'
                        
# 2023-10-27 09:08:55  438.71MB 
/bin/sh -c curl https://cran.r-project.org/src/base/R-4/$R_VERSION.tar.gz -o $R_VERSION.tar.gz &&         tar xvf $R_VERSION.tar.gz &&         cd $R_VERSION &&         ./configure && make && make install
                        
# 2023-10-27 08:56:15  0.00B 
/bin/sh -c #(nop)  ENV R_VERSION=R-4.2.0
                        
# 2023-10-27 08:56:15  0.00B 
/bin/sh -c #(nop) WORKDIR /usr/local/src
                        
# 2023-10-27 08:56:15  0.00B 
/bin/sh -c mkdir $DATA
                        
# 2023-10-27 08:56:14  0.00B 
/bin/sh -c #(nop)  ENV DATA=/usr/local/data
                        
# 2023-10-27 08:56:14  0.00B 
/bin/sh -c #(nop)  ENV BIN=/usr/local/bin
                        
# 2023-10-27 08:56:14  0.00B 
/bin/sh -c #(nop)  ENV SRC=/usr/local/src
                        
# 2023-10-27 08:56:13  121.61MB 
/bin/sh -c pip install requests igv-reports==1.8.0
                        
# 2023-10-27 08:56:06  17.15MB 
/bin/sh -c curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py &&     python get-pip.py
                        
# 2023-10-27 08:56:00  0.00B 
/bin/sh -c apt-get install -y python3-distutils
                        
# 2023-10-27 08:55:57  16.00B 
/bin/sh -c ln -sf /usr/bin/python3 /usr/bin/python
                        
# 2023-10-27 08:55:47  1.01GB 
/bin/sh -c apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y gcc g++ perl python3 automake make                                        wget curl libdb-dev                                        bzip2 zlibc zlib1g zlib1g-dev  default-jre                        python3-setuptools python3-dev build-essential python3-distutils                                        unzip libbz2-dev  liblzma-dev gfortran libreadline-dev libcurl4-openssl-dev libx11-dev                        libxt-dev x11-common libcairo2-dev libpng-dev  libjpeg-dev pkg-config                        libxml2-dev  libssl-dev libcurl4-openssl-dev pbzip2 git                        libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev &&     apt-get clean
                        
# 2023-08-09 00:35:50  0.00B 
/bin/sh -c #(nop)  MAINTAINER bhaas@broadinstitute.org
                        
# 2023-06-28 17:59:10  0.00B 
/bin/sh -c #(nop)  CMD ["/bin/bash"]
                        
# 2023-06-28 17:59:10  72.79MB 
/bin/sh -c #(nop) ADD file:12f97b7b044d0d1166dd59408c67f5610a764127aa8a01bc57db23bee48911af in / 
                        
# 2023-06-28 17:59:08  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.version=20.04
                        
# 2023-06-28 17:59:08  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.ref.name=ubuntu
                        
# 2023-06-28 17:59:08  0.00B 
/bin/sh -c #(nop)  ARG LAUNCHPAD_BUILD_ARCH
                        
# 2023-06-28 17:59:08  0.00B 
/bin/sh -c #(nop)  ARG RELEASE
                        
                    

镜像信息

{
    "Id": "sha256:4f849805d492d72e52df88e4ec6dd14fd316249a3931de83831960af0a722fb4",
    "RepoTags": [
        "trinityctat/starfusion:latest",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion:latest"
    ],
    "RepoDigests": [
        "trinityctat/starfusion@sha256:b66201d38db7055d84b6af2928c8cf44159254b747adad784250fbaa1230e86d",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/trinityctat/starfusion@sha256:f38633b3c03c337bfb96a5633d3207c8895feef889edfb3418b8191b458b3912"
    ],
    "Parent": "",
    "Comment": "",
    "Created": "2024-11-27T22:44:01.770102014Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "20.10.21",
    "Author": "bhaas@broadinstitute.org",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/usr/local/src/STAR-Fusion:/usr/local/src/STAR-Fusion/FusionInspector:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "SRC=/usr/local/src",
            "BIN=/usr/local/bin",
            "DATA=/usr/local/data",
            "R_VERSION=R-4.2.0",
            "SAMTOOLS_VERSION=1.9",
            "TRINITY_VERSION=2.15.1",
            "TRINITY_HOME=/usr/local/src/trinityrnaseq-v2.15.1",
            "PICARD_HOME=/usr/local/src",
            "STAR_VERSION=2.7.11a",
            "SALMON_VERSION=1.5.2",
            "FI_VERSION=2.10.0",
            "FI_HASH=91220a1abe6500fa953b3909d4dfdf79c41bd2c0",
            "BLAST_VERSION=2.9.0",
            "STAR_FUSION_VERSION=1.14.0",
            "STARF_CHECKOUT=9b20243b725d95a5699f6b8d787c9491d2938b9c",
            "STAR_FUSION_HOME=/usr/local/src/STAR-Fusion"
        ],
        "Cmd": [
            "/bin/bash"
        ],
        "Image": "sha256:83a6ff8cd26f5e378b1457b304640967c7ac513dd0e6517acd13af377d36a0f6",
        "Volumes": null,
        "WorkingDir": "/usr/local/src",
        "Entrypoint": null,
        "OnBuild": null,
        "Labels": {
            "org.opencontainers.image.ref.name": "ubuntu",
            "org.opencontainers.image.version": "20.04"
        }
    },
    "Architecture": "amd64",
    "Os": "linux",
    "Size": 5656799066,
    "GraphDriver": {
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