ghcr.io/bodenmillergroup/steinbock:0.14.2 linux/amd64

Docker拉取命令 无权限下载?点我修复

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2  ghcr.io/bodenmillergroup/steinbock:0.14.2

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2  ghcr.io/bodenmillergroup/steinbock:0.14.2

Shell快速替换命令

sed -i 's#ghcr.io/bodenmillergroup/steinbock:0.14.2#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2 && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2  ghcr.io/bodenmillergroup/steinbock:0.14.2'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2 && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2  ghcr.io/bodenmillergroup/steinbock:0.14.2'

镜像构建历史

# 2022-06-29 20:26:10  0.00B 配置容器启动时运行的命令
ENTRYPOINT ["/app/entrypoint.sh"]
                        
# 2022-06-29 20:26:10  0.00B 指定运行容器时使用的用户
USER steinbock:steinbock
                        
# 2022-06-29 20:26:10  0.00B 设置工作目录为/data
WORKDIR /data
                        
# 2022-06-29 20:26:10  65.00B 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c chmod +x /app/entrypoint.sh # buildkit
                        
# 2022-06-29 20:26:09  65.00B 复制新文件或目录到容器中
COPY entrypoint.sh /app/entrypoint.sh # buildkit
                        
# 2022-06-29 20:26:09  249.98KB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c SETUPTOOLS_SCM_PRETEND_VERSION="${STEINBOCK_VERSION#v}" pip install --no-deps -e "/app/steinbock[all]" # buildkit
                        
# 2022-06-29 20:26:01  1.28MB 复制新文件或目录到容器中
COPY steinbock /app/steinbock/steinbock/ # buildkit
                        
# 2022-06-29 20:26:01  2.97KB 复制新文件或目录到容器中
COPY conftest.py MANIFEST.in pyproject.toml setup.cfg setup.py /app/steinbock/ # buildkit
                        
# 2022-06-29 20:26:01  108.54MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c mkdir -p /opt/keras/models &&     curl -SsL https://deepcell-data.s3-us-west-1.amazonaws.com/saved-models/MultiplexSegmentation-9.tar.gz | tar -C /opt/keras/models -xzf - # buildkit
                        
# 2022-06-29 20:25:56  0.00B 设置环境变量 TF_CPP_MIN_LOG_LEVEL NO_AT_BRIDGE
ENV TF_CPP_MIN_LOG_LEVEL=2 NO_AT_BRIDGE=1
                        
# 2022-06-29 20:25:56  363.26MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c python -m pip install --upgrade -r /app/steinbock/requirements_deepcell${TENSORFLOW_SUFFIX}.txt &&     python -m pip install --no-deps deepcell==0.12.2 &&     python -m pip install --upgrade -r /app/steinbock/requirements.txt # buildkit
                        
# 2022-06-29 20:25:13  385.00B 复制新文件或目录到容器中
COPY requirements_deepcell.txt /app/steinbock/requirements_deepcell.txt # buildkit
                        
# 2022-06-29 20:25:13  451.00B 复制新文件或目录到容器中
COPY requirements.txt /app/steinbock/requirements.txt # buildkit
                        
# 2022-06-29 20:25:13  257.34KB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c mkdir /opt/cellprofiler_plugins &&     curl -SsL "https://github.com/BodenmillerGroup/ImcPluginsCP/archive/refs/tags/v${CELLPROFILER_PLUGINS_VERSION}.tar.gz" | tar -C /opt/cellprofiler_plugins -xzf - "ImcPluginsCP-${CELLPROFILER_PLUGINS_VERSION}/plugins/" --strip-components=2 # buildkit
                        
# 2022-06-29 20:25:13  1.09GB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c python -m pip install --upgrade "cellprofiler==${CELLPROFILER_VERSION}" # buildkit
                        
# 2022-06-29 20:22:17  421.70MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c curl -SsO https://extras.wxpython.org/wxPython4/extras/linux/gtk3/ubuntu-20.04/wxPython-4.1.0-cp38-cp38-linux_x86_64.whl &&     python -m pip install --upgrade numpy wheel wxPython-4.1.0-cp38-cp38-linux_x86_64.whl &&     rm wxPython-4.1.0-cp38-cp38-linux_x86_64.whl # buildkit
                        
# 2022-06-29 20:21:54  0.00B 设置环境变量 JAVA_HOME
ENV JAVA_HOME=/usr/lib/jvm/java-11-openjdk-amd64
                        
# 2022-06-29 20:21:54  1.30GB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c apt-get install -y libmysqlclient-dev libnotify-dev libsdl2-dev libwebkitgtk-3.0 openjdk-11-jdk-headless # buildkit
                        
# 2022-06-29 20:20:02  1.35GB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c mkdir /opt/ilastik &&     curl -SsL "https://files.ilastik.org/${ILASTIK_BINARY}" | tar -C /opt/ilastik -xjf - --strip-components=1 # buildkit
                        
# 2022-06-29 20:19:00  70.00B 复制新文件或目录到容器中
COPY fixuid.yml /etc/fixuid/config.yml # buildkit
                        
# 2022-06-29 20:19:00  3.79MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c USER=steinbock &&     GROUP=steinbock &&     curl -SsL "https://github.com/boxboat/fixuid/releases/download/v${FIXUID_VERSION}/fixuid-${FIXUID_VERSION}-linux-amd64.tar.gz" | tar -C /usr/local/bin -xzf - &&     chmod 4755 /usr/local/bin/fixuid &&     mkdir -p /etc/fixuid # buildkit
                        
# 2022-06-29 20:19:00  0.00B 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c mkdir /data &&     chown steinbock:steinbock /data # buildkit
                        
# 2022-06-29 20:18:59  1.98GB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c python -m pip install --upgrade pip setuptools wheel &&     python -m pip install --upgrade tensorflow${TENSORFLOW_SUFFIX}==${TENSORFLOW_VERSION} # buildkit
                        
# 2022-06-29 20:18:20  0.00B 设置环境变量 PATH
ENV PATH=/opt/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2022-06-29 20:18:20  6.51MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c python3.8 -m venv /opt/venv # buildkit
                        
# 2022-06-29 20:18:18  333.89KB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c addgroup --gid 1000 steinbock &&     adduser --uid 1000 --ingroup steinbock --disabled-password --gecos "" steinbock # buildkit
                        
# 2022-06-29 20:18:17  47.00B 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c ln -snf "/usr/share/zoneinfo/${TZ}" /etc/localtime && echo "${TZ}" > /etc/timezone # buildkit
                        
# 2022-06-29 20:18:17  0.00B 设置环境变量 LANG LANGUAGE LC_ALL
ENV LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-8
                        
# 2022-06-29 20:18:17  3.05MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen && locale-gen # buildkit
                        
# 2022-06-29 20:18:15  125.04MB 执行命令并创建新的镜像层
RUN |8 STEINBOCK_VERSION=0.14.2 TENSORFLOW_VERSION=2.8.0 TENSORFLOW_SUFFIX= FIXUID_VERSION=0.5.1 ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2 CELLPROFILER_VERSION=4.2.1 CELLPROFILER_PLUGINS_VERSION=4.2.1 TZ=Europe/Zurich /bin/sh -c apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub &&     apt-get update &&     apt-get install -y build-essential git locales python3.8 python3.8-dev python3.8-venv # buildkit
                        
# 2022-06-29 20:18:15  0.00B 设置环境变量 DEBIAN_FRONTEND PYTHONDONTWRITEBYTECODE PYTHONUNBUFFERED
ENV DEBIAN_FRONTEND=noninteractive PYTHONDONTWRITEBYTECODE=1 PYTHONUNBUFFERED=1
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG TZ=Europe/Zurich
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG CELLPROFILER_PLUGINS_VERSION=4.2.1
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG CELLPROFILER_VERSION=4.2.1
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG ILASTIK_BINARY=ilastik-1.3.3post3-Linux.tar.bz2
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG FIXUID_VERSION=0.5.1
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG TENSORFLOW_SUFFIX
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG TENSORFLOW_VERSION
                        
# 2022-06-29 20:18:15  0.00B 定义构建参数
ARG STEINBOCK_VERSION
                        
# 2022-02-03 01:16:07  1.84KB 
|2 TF_PACKAGE=tensorflow-cpu TF_PACKAGE_VERSION=2.8.0 /bin/sh -c chmod a+rwx /etc/bash.bashrc
                        
# 2022-02-03 01:16:06  1.84KB 
/bin/sh -c #(nop) COPY file:6609b66b01832c07e14dfcb7479f7e1aa64e7fb0ee0aaf904ffcc594dd41e212 in /etc/bash.bashrc 
                        
# 2022-02-03 01:16:02  920.59MB 
|2 TF_PACKAGE=tensorflow-cpu TF_PACKAGE_VERSION=2.8.0 /bin/sh -c python3 -m pip install --no-cache-dir ${TF_PACKAGE}${TF_PACKAGE_VERSION:+==${TF_PACKAGE_VERSION}}
                        
# 2022-02-03 01:15:24  0.00B 
/bin/sh -c #(nop)  ARG TF_PACKAGE_VERSION=
                        
# 2022-02-03 01:15:24  0.00B 
/bin/sh -c #(nop)  ARG TF_PACKAGE=tensorflow
                        
# 2022-02-03 01:15:24  16.00B 
/bin/sh -c ln -s $(which python3) /usr/local/bin/python
                        
# 2022-02-03 01:15:23  12.96MB 
/bin/sh -c python3 -m pip --no-cache-dir install --upgrade     "pip<20.3"     setuptools
                        
# 2022-02-03 01:15:16  297.60MB 
/bin/sh -c apt-get update && apt-get install -y     python3     python3-pip
                        
# 2022-02-03 01:10:13  0.00B 
/bin/sh -c #(nop)  ENV LANG=C.UTF-8
                        
# 2022-02-03 01:10:12  49.65MB 
/bin/sh -c apt-get update && apt-get install -y curl
                        
# 2022-02-03 01:09:52  0.00B 
/bin/sh -c #(nop)  ENV DEBIAN_FRONTEND=noninteractive
                        
# 2022-02-02 10:14:46  0.00B 
/bin/sh -c #(nop)  CMD ["bash"]
                        
# 2022-02-02 10:14:45  72.78MB 
/bin/sh -c #(nop) ADD file:3ccf747d646089ed7fbb43c40c45dd43e86f0674115f856efada93c7e4a63624 in / 
                        
                    

镜像信息

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    "Id": "sha256:39d100006e7bc4d0bbc4fc454302eb6d7339a3e33abf78d70e489ceb7e028ac5",
    "RepoTags": [
        "ghcr.io/bodenmillergroup/steinbock:0.14.2",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock:0.14.2"
    ],
    "RepoDigests": [
        "ghcr.io/bodenmillergroup/steinbock@sha256:43c103709ef81ff7d76af854c5480b234d3658bb7ac3d98fec2f81704ad3c717",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/bodenmillergroup/steinbock@sha256:43c103709ef81ff7d76af854c5480b234d3658bb7ac3d98fec2f81704ad3c717"
    ],
    "Parent": "",
    "Comment": "buildkit.dockerfile.v0",
    "Created": "2022-06-29T12:26:10.03381226Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "steinbock:steinbock",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/opt/venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "DEBIAN_FRONTEND=noninteractive",
            "LANG=en_US.UTF-8",
            "PYTHONDONTWRITEBYTECODE=1",
            "PYTHONUNBUFFERED=1",
            "LANGUAGE=en_US:en",
            "LC_ALL=en_US.UTF-8",
            "JAVA_HOME=/usr/lib/jvm/java-11-openjdk-amd64",
            "TF_CPP_MIN_LOG_LEVEL=2",
            "NO_AT_BRIDGE=1"
        ],
        "Cmd": null,
        "Image": "",
        "Volumes": null,
        "WorkingDir": "/data",
        "Entrypoint": [
            "/app/entrypoint.sh"
        ],
        "OnBuild": null,
        "Labels": {
            "org.opencontainers.image.created": "2022-06-29T12:17:42.708Z",
            "org.opencontainers.image.description": "Dockerized multi-channel image processing framework",
            "org.opencontainers.image.licenses": "MIT",
            "org.opencontainers.image.revision": "f12591dbb049b0e077dafca66c32f3cea323a12b",
            "org.opencontainers.image.source": "https://github.com/BodenmillerGroup/steinbock",
            "org.opencontainers.image.title": "steinbock",
            "org.opencontainers.image.url": "https://github.com/BodenmillerGroup/steinbock",
            "org.opencontainers.image.version": "0"
        }
    },
    "Architecture": "amd64",
    "Os": "linux",
    "Size": 8098887791,
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