ghcr.io/marcelauliano/mitohifi:master linux/amd64

Docker拉取命令

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master  ghcr.io/marcelauliano/mitohifi:master

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master  ghcr.io/marcelauliano/mitohifi:master

Shell快速替换命令

sed -i 's#ghcr.io/marcelauliano/mitohifi:master#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master  ghcr.io/marcelauliano/mitohifi:master'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master  ghcr.io/marcelauliano/mitohifi:master'

镜像构建历史

# 2025-05-11 17:26:00  0.00B 设置环境变量 PATH
ENV PATH=/opt/wrappers:/opt/cdhit/:/opt/hifiasm-0.16.1/:/opt/MitoHiFi/src/:/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
                        
# 2025-05-11 17:26:00  0.00B 设置环境变量 CONDA_DIR
ENV CONDA_DIR=/opt/conda
                        
# 2025-05-11 17:26:00  0.00B 设置工作目录为/tmp
WORKDIR /tmp
                        
# 2025-05-11 17:26:00  164.65KB 执行命令并创建新的镜像层
RUN /bin/sh -c cd src     && chmod +x *.py     && sed -i '1i#!/usr/bin/env python3' mitohifi.py findFrameShifts.py fixContigHeaders.py     && sed -i '1 s/python\>/python3/' *.py     && sed -i 's/"python2",\s//' parallel_annotation_mitos.py     && sed -i 's/MITOS\/data/\/opt\/databases/' parallel_annotation_mitos.py # buildkit
                        
# 2025-05-11 17:25:59  0.00B 设置工作目录为/opt/MitoHiFi
WORKDIR /opt/MitoHiFi
                        
# 2025-05-11 17:25:59  6.49MB 复制新文件或目录到容器中
COPY . /opt/MitoHiFi # buildkit
                        
# 2025-03-05 00:22:29  176.92MB 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c pip3 --no-cache-dir install --upgrade pip     && pip3 --no-cache-dir install biopython     pandas     Pillow     matplotlib     entrezpy     dna_features_viewer==3.1.2     bcbio-gff==0.7.0 # buildkit
                        
# 2025-03-05 00:22:16  0.00B 设置工作目录为/opt
WORKDIR /opt
                        
# 2025-03-05 00:22:16  108.13MB 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c curl -L https://zenodo.org/record/4284483/files/refseq89m.tar.bz2?download=1 | tar -jxvf -     && curl -L https://zenodo.org/record/4284483/files/refseq89f.tar.bz2?download=1 | tar -jxvf - # buildkit
                        
# 2025-03-05 00:22:09  0.00B 设置工作目录为/opt/databases
WORKDIR /opt/databases
                        
# 2025-03-05 00:22:09  0.00B 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c mkdir -p /opt/databases # buildkit
                        
# 2025-03-05 00:22:09  0.00B 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c $CONDA_DIR/bin/conda clean -a # buildkit
                        
# 2025-03-05 00:22:07  108.43MB 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c $CONDA_DIR/bin/conda create -n mitofinder_env python=2.7 # buildkit
                        
# 2025-03-05 00:21:57  2.75GB 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c $CONDA_DIR/bin/conda create -n mitos_env -c bioconda -c conda-forge mitos=2.1.0 "r-base>4" # buildkit
                        
# 2025-03-05 00:19:52  414.02MB 执行命令并创建新的镜像层
RUN |1 CONDA_DIR=/opt/conda /bin/sh -c curl -L -O "https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-$(uname)-$(uname -m).sh"     && bash Miniforge3-$(uname)-$(uname -m).sh -bfp $CONDA_DIR     && rm -rf Miniforge3-$(uname)-$(uname -m).sh # buildkit
                        
# 2025-03-05 00:19:44  0.00B 定义构建参数
ARG CONDA_DIR=/opt/conda
                        
# 2025-03-05 00:19:44  272.00B 执行命令并创建新的镜像层
RUN /bin/sh -c chmod -R 755 /opt/wrappers # buildkit
                        
# 2025-03-05 00:19:44  146.00B 复制新文件或目录到容器中
COPY mitofinder_wrapper.sh /opt/wrappers/mitofinder # buildkit
                        
# 2025-03-05 00:19:44  126.00B 复制新文件或目录到容器中
COPY mitos_wrapper.sh /opt/wrappers/runmitos.py # buildkit
                        
# 2025-03-05 00:19:44  0.00B 执行命令并创建新的镜像层
RUN /bin/sh -c mkdir -p /opt/wrappers # buildkit
                        
# 2025-03-05 00:19:44  6.32MB 执行命令并创建新的镜像层
RUN /bin/sh -c git clone https://github.com/weizhongli/cdhit.git &&     cd cdhit &&     make MAX_SEQ=10000000 # buildkit
                        
# 2025-03-05 00:19:38  967.77MB 执行命令并创建新的镜像层
RUN /bin/sh -c chmod -R 755 /opt/MitoFinder # buildkit
                        
# 2025-03-05 00:19:29  1.20GB 执行命令并创建新的镜像层
RUN /bin/sh -c git clone https://github.com/RemiAllio/MitoFinder.git     && cd MitoFinder     && ./install.sh     && sed -i 's/\/usr\/bin\/python/\/usr\/bin\/env python/' mitofinder # buildkit
                        
# 2025-03-05 00:16:41  126.00MB 执行命令并创建新的镜像层
RUN /bin/sh -c curl -L https://github.com/chhylp123/hifiasm/archive/refs/tags/0.16.1.tar.gz     | tar -xzvf -     && cd hifiasm-0.16.1     && make     && wget -P /usr/local/src https://bootstrap.pypa.io/pip/2.7/get-pip.py     && python2 /usr/local/src/get-pip.py     && python2 -m pip --no-cache-dir install biopython==1.70 # buildkit
                        
# 2025-03-05 00:15:48  6.17MB 执行命令并创建新的镜像层
RUN /bin/sh -c curl -L https://github.com/lh3/minimap2/releases/download/v2.24/minimap2-2.24_x64-linux.tar.bz2     | tar -jxvf  - --no-same-owner # buildkit
                        
# 2025-03-05 00:15:47  0.00B 设置工作目录为/opt
WORKDIR /opt
                        
# 2025-03-05 00:15:47  979.02MB 执行命令并创建新的镜像层
RUN /bin/sh -c apt-get -qq -y update     && apt-get -qq -y install     autoconf     automake     bedtools     build-essential     curl     default-jre     git     infernal     libopenjp2-7     libtiff5     libz-dev     mafft     ncbi-blast+     python3-dev     python3-pip     samtools     wget     vim     && rm -rf /var/lib/apt/lists/* # buildkit
                        
# 2025-03-05 00:15:47  0.00B 设置环境变量 DEBIAN_FRONTEND
ENV DEBIAN_FRONTEND=noninteractive
                        
# 2023-05-30 17:32:09  0.00B 
/bin/sh -c #(nop)  CMD ["/bin/bash"]
                        
# 2023-05-30 17:32:09  63.16MB 
/bin/sh -c #(nop) ADD file:3c74e7e08cbf9a87694ce6fa541af617599680fa54d9e48556fc0fbc120b4a83 in / 
                        
# 2023-05-30 17:32:07  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.version=18.04
                        
# 2023-05-30 17:32:07  0.00B 
/bin/sh -c #(nop)  LABEL org.opencontainers.image.ref.name=ubuntu
                        
# 2023-05-30 17:32:07  0.00B 
/bin/sh -c #(nop)  ARG LAUNCHPAD_BUILD_ARCH
                        
# 2023-05-30 17:32:07  0.00B 
/bin/sh -c #(nop)  ARG RELEASE
                        
                    

镜像信息

{
    "Id": "sha256:b1f6d028d496aee1835899b80dac6641583d5d40c283997768dc7396991d4716",
    "RepoTags": [
        "ghcr.io/marcelauliano/mitohifi:master",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi:master"
    ],
    "RepoDigests": [
        "ghcr.io/marcelauliano/mitohifi@sha256:2c081d17716543c4aa5c0704df9b5e5568a6c8aa3cb3684cfc9c75df7c845e0e",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/ghcr.io/marcelauliano/mitohifi@sha256:2c081d17716543c4aa5c0704df9b5e5568a6c8aa3cb3684cfc9c75df7c845e0e"
    ],
    "Parent": "",
    "Comment": "buildkit.dockerfile.v0",
    "Created": "2025-05-11T09:26:00.163994163Z",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/opt/wrappers:/opt/cdhit/:/opt/hifiasm-0.16.1/:/opt/MitoHiFi/src/:/opt/MitoFinder/:/opt/minimap2-2.24_x64-linux/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "DEBIAN_FRONTEND=noninteractive",
            "CONDA_DIR=/opt/conda"
        ],
        "Cmd": [
            "/bin/bash"
        ],
        "Image": "",
        "Volumes": null,
        "WorkingDir": "/tmp",
        "Entrypoint": null,
        "OnBuild": null,
        "Labels": {
            "org.opencontainers.image.created": "2025-05-11T09:24:45.061Z",
            "org.opencontainers.image.description": "Find, circularise and annotate mitogenome from PacBio assemblies",
            "org.opencontainers.image.licenses": "MIT",
            "org.opencontainers.image.ref.name": "ubuntu",
            "org.opencontainers.image.revision": "304837767b19087e9b6e69263635571c20a079c8",
            "org.opencontainers.image.source": "https://github.com/marcelauliano/MitoHiFi",
            "org.opencontainers.image.title": "MitoHiFi",
            "org.opencontainers.image.url": "https://github.com/marcelauliano/MitoHiFi",
            "org.opencontainers.image.version": "master"
        }
    },
    "Architecture": "amd64",
    "Os": "linux",
    "Size": 6910240924,
    "GraphDriver": {
        "Data": {
            "LowerDir": "/var/lib/docker/overlay2/6f9caaa58f68c80da42ff811514271b1a91a784f0e7612509b3e43faaed457a8/diff:/var/lib/docker/overlay2/cdeb384dae8c847e91b60ec8a3b8b01422060ddfc879a2eb4d0a13e942ece2a6/diff:/var/lib/docker/overlay2/05daf970052f6539d78cf89e6d2866fc76e8bd363042f0c620c5860a5d2cf029/diff:/var/lib/docker/overlay2/c1e21f2c0d2d78b3bc654ebf0aca5824a16dd2782a355b3096a1c7fcd84035f9/diff:/var/lib/docker/overlay2/255a2eeb290cd31e60920d6d725e429bdfb8cdeac0982b455815e6fa8fe48f53/diff:/var/lib/docker/overlay2/e36c38803446bc1f1664c2500b340d99e1d51bf01f6be4ca10c278da5aa3812d/diff:/var/lib/docker/overlay2/8d586f4638c004d8b650289f9f626b88552b6d66b885ca596808ce4a3958540d/diff:/var/lib/docker/overlay2/c04455b9a43a3f7a5e91320b121982c6227cdbafd41bc9c900abf60f85242467/diff:/var/lib/docker/overlay2/8aabbff73781ef97169323923bf42ca791b07646c0f8703f24d653c7c9523d78/diff:/var/lib/docker/overlay2/c032e4276d7d151726270e3524ee489ad734228df3f1831c905c310ea3f34725/diff:/var/lib/docker/overlay2/c00b9f2302f47da481f43b5032cc1991402968931ba82feaf829da8d719026f9/diff:/var/lib/docker/overlay2/5a4273f46e62cecb828540c2defda482e04d9cf47b679a2458bec459398578e1/diff:/var/lib/docker/overlay2/b9bbdb54911ff1f1539e595ccef5781559fd593e986b9c4f88cc306b591eb5e5/diff:/var/lib/docker/overlay2/703d3410cabe7ec531553cf1d3391450ea907b135420396767fe1be2fab8ff33/diff:/var/lib/docker/overlay2/f9be3f8b2078a2d171a5840fca624686ef131e2f63810b4bc1bb939c1a1cbe5d/diff:/var/lib/docker/overlay2/612693f38ed7afdb2e939e1c754eab84d6cf28eee758d87ae29a22709344a916/diff:/var/lib/docker/overlay2/8a2181f3469f96c60429d1b6defedee4b17a21c76a0897a64b01adcd650c77fc/diff:/var/lib/docker/overlay2/8f2b12866e59edcc21bd6b681e070c444b79fc3158c255b222301bd4e103b0fd/diff:/var/lib/docker/overlay2/7b24ac3ea72c11c65e89c95df133ae455065a6091f14ce895425a226876168e4/diff:/var/lib/docker/overlay2/0527dac4d4b24525d2b4d1d1f2a578fd2196790ff266efdaead178f68b844953/diff:/var/lib/docker/overlay2/f486ce28ade9827b8ebfecc5731d6e611ccec4a0de567d9ccb10cf7ea21058cc/diff:/var/lib/docker/overlay2/f97224a03b4336d5f44a2e3615c6c026d3ad84b5a1a5a734154e740ecbf5a159/diff:/var/lib/docker/overlay2/2046e3ea8560e11c7f7801d4b2f7cdae7defa5ae992539ab74b7e98ac02d5915/diff:/var/lib/docker/overlay2/950c92cd87c6d6ecb67f7bda7908bfbf21c3f9f59f26f535028c2871a02b572b/diff",
            "MergedDir": "/var/lib/docker/overlay2/b00eb6a104a0f50a096c6a852e46cf9e77da739ffe14f6b982a2b91c1778746c/merged",
            "UpperDir": "/var/lib/docker/overlay2/b00eb6a104a0f50a096c6a852e46cf9e77da739ffe14f6b982a2b91c1778746c/diff",
            "WorkDir": "/var/lib/docker/overlay2/b00eb6a104a0f50a096c6a852e46cf9e77da739ffe14f6b982a2b91c1778746c/work"
        },
        "Name": "overlay2"
    },
    "RootFS": {
        "Type": "layers",
        "Layers": [
            "sha256:548a79621a426b4eb077c926eabac5a8620c454fb230640253e1b44dc7dd7562",
            "sha256:b8235451f9e2fe6bd76a9d71c6d4b33e75c3b82a3314e1cb354ba4122fb154ee",
            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
            "sha256:ba538302426baf1a02a4418c0e4963ff3d078c866e58414285b6596cd4908bbe",
            "sha256:11b84cb4582eefea21f0998dbd732bce76ad9148ad42c079600a297d39a5804c",
            "sha256:74faa7f9dbd741dfed171797a43982c053a5cd2354541fbccdb84a5fd0d5088d",
            "sha256:13c2cf523bf81e2116f9f0d453425ba86c924ee249d9347235036cb9b8eed780",
            "sha256:0f12ef3cbd2b5525babadd2858b0b69b1ecda528a8b4c0bbbf2b8cae54b4430c",
            "sha256:057f93271b64b92b42b3002cf74b44fce73256843ee9c840ed65651a13d9ae2b",
            "sha256:743c22cc290382ff90f27a18c08aa84e67325d9ad7a8dccdaab0393ef740b96b",
            "sha256:496d41fadff250ea56c0b386592588d0905b65f72995aad7d4fd61cb0962199a",
            "sha256:2c918405dd53351e35787d3dbc9c59cd9d9b0527db0e6ce0027582fe50cbb3aa",
            "sha256:6ebe475604821120092ae21c46f38c51a4bb71ecf3c61d9712c7648e01e8e84d",
            "sha256:f4ce24d12c8533a53208a4b9a985b9dd72e063f477500dd08913ad3cf5111109",
            "sha256:8342b22eb91d7c43f9e09a020957b70424a7b904133917bbb77ad715d525e2c2",
            "sha256:17f18c4ae855551d52bc45d2bc58c5cf99e2f288a24ec44aebcbcb222bcaf859",
            "sha256:dc4b1ceea98e8279b8b0bf7b560edc088cc45dde25ce560619af01d9ac151883",
            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
            "sha256:e48c49e21abba5dcdfd1e6619e0978d8983dceea6269cfc13653f453ee1fb24c",
            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
            "sha256:73369437201444d7965625429bdc06f04083f820d0a2ed980073076fa02902ca",
            "sha256:a422cb7933941a26d49abe327a8599df244afaf17a1a618a49267fc97e9e8f2f",
            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef",
            "sha256:66df149014a726da92f788fd7d74d26f335b33aeb3011dac20c970781d2c752d",
            "sha256:5f70bf18a086007016e948b04aed3b82103a36bea41755b6cddfaf10ace3c6ef"
        ]
    },
    "Metadata": {
        "LastTagTime": "2025-10-21T19:35:10.590717268+08:00"
    }
}