docker.io/ncbi/pgap:2024-07-18.build7555 linux/amd64

docker.io/ncbi/pgap:2024-07-18.build7555 - 国内下载镜像源 浏览次数:73

P-GAP

P-GAP是一款用于蛋白质序列与结构预测的工具包。它提供了多种功能,包括序列分类、结构预测、功能预测等。

使用P-GAP可以帮助研究人员快速准确地预测蛋白质的结构和功能,这对理解蛋白质的生物学意义和药理学应用具有重要价值。

源镜像 docker.io/ncbi/pgap:2024-07-18.build7555
国内镜像 swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555
镜像ID sha256:25d52721af3b9f188b0ae4e640c9ce03ffae89076278cac8e2ac78f0cdcc436e
镜像TAG 2024-07-18.build7555
大小 10.66GB
镜像源 docker.io
项目信息 Docker-Hub主页 🚀项目TAG 🚀
CMD /bin/sh
启动入口
工作目录 /pgap
OS/平台 linux/amd64
浏览量 73 次
贡献者
镜像创建 2024-07-19T07:43:30.041375842-04:00
同步时间 2024-09-23 01:42
更新时间 2024-12-22 04:07
环境变量
PATH=/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PGAP_VERSION=2024-07-18.build7555 GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system NCBI=/netopt/ncbi_tools64 NI_SERVICE_NAME_TAXONOMY=some bogus value NI_SERVICE_NAME_TAXONOMY3=some bogus value

Docker拉取命令 无权限下载?点我修复

docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555
docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555  docker.io/ncbi/pgap:2024-07-18.build7555

Containerd拉取命令

ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555
ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555  docker.io/ncbi/pgap:2024-07-18.build7555

Shell快速替换命令

sed -i 's#ncbi/pgap:2024-07-18.build7555#swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555#' deployment.yaml

Ansible快速分发-Docker

#ansible k8s -m shell -a 'docker pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555 && docker tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555  docker.io/ncbi/pgap:2024-07-18.build7555'

Ansible快速分发-Containerd

#ansible k8s -m shell -a 'ctr images pull swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555 && ctr images tag  swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555  docker.io/ncbi/pgap:2024-07-18.build7555'

镜像历史

大小 创建时间 层信息
0.00B 2024-07-19 19:43:30 CMD ["/bin/sh"]
0.00B 2024-07-19 19:43:30 WORKDIR /pgap
0.00B 2024-07-19 19:43:29 RUN /bin/sh -c mkdir /pgap/input # buildkit
679.81MB 2024-07-19 19:43:29 RUN /bin/sh -c chmod -R a+rx /root/ # buildkit
6.86KB 2024-07-19 19:43:19 RUN /bin/sh -c venv/bin/pip3 install -U cwlref-runner # buildkit
91.96MB 2024-07-19 19:43:17 RUN /bin/sh -c venv/bin/pip3 install -U cwltool[deps]==3.1.20230513155734 # buildkit
113.27KB 2024-07-19 19:43:07 RUN /bin/sh -c venv/bin/pip3 install -U filelock # buildkit
3.53MB 2024-07-19 19:43:05 RUN /bin/sh -c venv/bin/pip3 install -U PyYAML # buildkit
927.93KB 2024-07-19 19:43:04 RUN /bin/sh -c venv/bin/pip3 install -U 'urllib3<2' # buildkit
0.00B 2024-07-19 19:43:01 WORKDIR /root
287.10MB 2024-07-19 19:43:01 COPY pgap /pgap/pgap # buildkit
0.00B 2024-07-19 19:43:01 USER root
0.00B 2024-07-19 19:12:45 CMD ["/usr/bin/bash"]
583.27MB 2024-07-19 19:12:45 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c chmod -R a+rx /root/ # buildkit
0.00B 2024-07-19 19:12:39 WORKDIR /home/gpipe
192.00B 2024-07-19 19:12:39 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c echo 'export PS1="$ "' >> /root/.bash_profile # buildkit
0.00B 2024-07-19 19:12:39 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c rm -rf binaries # buildkit
687.00B 2024-07-19 19:12:38 COPY ncbirc /netopt/ncbi_tools64/.ncbirc # buildkit
3.31MB 2024-07-19 19:12:38 COPY libstdc++.so.6 libgcc_s.so.1 libgomp.so.1 /opt/ncbi/gcc/12.2.0/lib64/ # buildkit
95.70KB 2024-07-19 19:12:38 COPY liblmdb.so /opt/ncbi/64/lmdb-0.9.24/lib64/liblmdb.so # buildkit
0.00B 2024-07-19 19:12:38 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir -p /opt/ncbi/64/lmdb-0.9.24/lib64/ /opt/ncbi/gcc/12.2.0/lib64/ # buildkit
27.91KB 2024-07-19 19:12:37 COPY scripts/* /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin/ # buildkit
359.42MB 2024-07-19 19:12:37 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ./cleanup_image.sh # buildkit
1.21KB 2024-07-19 19:12:36 COPY ./cleanup_image.sh /root # buildkit
475.78MB 2024-07-19 19:12:36 COPY binaries/bin/* /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/bin/ # buildkit
96.00B 2024-07-19 19:12:35 COPY package.versions /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/ # buildkit
163.79MB 2024-07-19 19:12:35 COPY binaries/third-party-bin /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin # buildkit
475.78MB 2024-07-19 19:12:35 COPY binaries/bin /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin # buildkit
0.00B 2024-07-19 19:12:34 ENV NI_SERVICE_NAME_TAXONOMY3=some bogus value
0.00B 2024-07-19 19:12:34 ENV NI_SERVICE_NAME_TAXONOMY=some bogus value
0.00B 2024-07-19 19:12:34 ENV PATH=/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
0.00B 2024-07-19 19:12:34 ENV PATH=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
0.00B 2024-07-19 19:12:34 ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
0.00B 2024-07-19 19:12:34 ENV NCBI=/netopt/ncbi_tools64
297.33KB 2024-07-19 19:12:34 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c useradd -ms /bin/bash gpipe # buildkit
0.00B 2024-07-19 19:12:33 WORKDIR /root
141.85MB 2024-07-19 19:12:33 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c find . -maxdepth 1 -type f -not -name "*.p*" -not -name "*.txt" -not -name "*.ini" -not -name "cluster_blastp_wnode" -print0 | xargs -0 -i strip {} # buildkit
0.00B 2024-07-19 19:12:31 WORKDIR /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin
110.00B 2024-07-19 19:12:31 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mv ${GP_HOME}/next ${GP_HOME}/current && ln -s ${GP_HOME}/current/arch/x86_64/bin ${GP_HOME}/bin # buildkit
28.00B 2024-07-19 19:12:31 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ln -s /netmnt/vast01/gp/ThirdParty /panfs/pan1/gpipe/ThirdParty # buildkit
6.00B 2024-07-19 19:12:30 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c cd /netmnt/vast01/gp/ThirdParty/tRNAscan-SE && rm -rf production && ln -s ${trnascan_version} production # buildkit
165.82MB 2024-07-19 19:12:30 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir /netmnt/vast01/gp/ThirdParty/GeneMark && cd /netmnt/vast01/gp/ThirdParty/GeneMark && tar xvf /root/binaries/genemark.tgz # buildkit
2.73GB 2024-07-19 19:12:27 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar --exclude='*/etc' --exclude='*/setup' --exclude='*/src.tar.gz' -xvf install.tar.gz -C /panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system && tar xvPf linked_exe.tar -C / && tar xvPf libraries.tar -C / --skip-old-files && tar xvPf trnascan.tgz -C / # buildkit
0.00B 2024-07-19 19:12:09 WORKDIR /root/binaries
25.85MB 2024-07-19 19:12:09 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf pplacer.tgz -C / # buildkit
25.36MB 2024-07-19 19:12:09 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf prodigal.tgz -C / # buildkit
27.62MB 2024-07-19 19:12:08 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c tar xvPf infernal.tgz -C / # buildkit
1.96GB 2024-07-19 19:12:05 COPY binaries /root/binaries # buildkit
0.00B 2024-07-19 19:12:02 WORKDIR /root
25.87MB 2024-07-19 19:12:02 COPY pplacer.tgz /root # buildkit
25.37MB 2024-07-19 19:12:02 COPY prodigal.tgz /root # buildkit
27.64MB 2024-07-19 19:12:02 COPY infernal.tgz /root # buildkit
34.00B 2024-07-19 19:12:02 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c mkdir -p ${GP_HOME} && ln -s /panfs/pan1.be-md.ncbi.nlm.nih.gov /panfs/pan1 # buildkit
0.00B 2024-07-19 19:12:01 ENV GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system
0.00B 2024-07-19 19:12:01 ENV PGAP_VERSION=2024-07-18.build7555
208.00B 2024-07-19 19:12:01 COPY DATA_CONFIG /root/venv/lib/python3.9/site-packages/checkm/DATA_CONFIG # buildkit
12.34MB 2024-07-19 19:12:01 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U setuptools # buildkit
0.00B 2024-07-19 19:11:59 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 show setuptools # buildkit
177.95MB 2024-07-19 19:11:58 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U checkm-genome # buildkit
0.00B 2024-07-19 19:11:53 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 show setuptools # buildkit
116.57MB 2024-07-19 19:11:52 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U pysam # buildkit
95.44MB 2024-07-19 19:11:50 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install -U matplotlib # buildkit
90.80MB 2024-07-19 19:11:45 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c venv/bin/pip3 install numpy==1.26.4 # buildkit
15.71MB 2024-07-19 19:11:41 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c /opt/python-3.9/bin/python3.9 -m venv venv # buildkit
2.47KB 2024-07-19 19:11:38 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c ln -s /usr/bin/node /usr/bin/nodejs && rm /etc/yum.repos.d/ncbi.repo && echo -e "* soft nofile 8192\n* hard nofile 8192\n" >> /etc/security/limits.conf # buildkit
60.65MB 2024-07-19 19:11:37 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install bzip2-devel xz-devel zlib-devel # buildkit
12.90MB 2024-07-19 19:11:36 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum makecache # buildkit
147.94MB 2024-07-19 19:11:34 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install binutils perl sqlite ncbi-crispr${ncbi_crisper_version} nodejs ncbi-gcc730-opt-libs ncbi-gcc493-opt-libs python3-pyyaml # buildkit
138.19MB 2024-07-19 19:11:30 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install ncbi-python39 nodejs # buildkit
49.04MB 2024-07-19 19:11:25 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install https://repo.ius.io/ius-release-el7.rpm https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm # buildkit
1.08GB 2024-07-19 19:11:23 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y groupinstall development # buildkit
17.90MB 2024-07-19 19:10:45 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y install yum-utils # buildkit
168.05MB 2024-07-19 19:10:43 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c yum -y update -v # buildkit
121.00B 2024-07-19 19:10:28 RUN |7 version=2024-07-18.build7555 bindir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin libdir=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/lib trnascan_version=2.0.12 ncbi_crisper_version=1.03 prodigal_version=2.6.3 pplacer_version=1.1a18 /bin/sh -c echo "ip_resolve=4" >> /etc/yum.conf # buildkit
1.66KB 2024-07-19 19:10:27 COPY --chown=root:root etc /etc # buildkit
0.00B 2024-06-27 20:51:13 WORKDIR /root
0.00B 2024-06-27 20:51:13 USER root
0.00B 2024-06-27 20:51:13 ARG pplacer_version
0.00B 2024-06-27 20:51:13 ARG prodigal_version
0.00B 2024-06-27 20:51:13 ARG ncbi_crisper_version
0.00B 2024-06-27 20:51:13 ARG trnascan_version
0.00B 2024-06-27 20:51:13 ARG libdir
0.00B 2024-06-27 20:51:13 ARG bindir
0.00B 2024-06-27 20:51:13 ARG version
0.00B 2024-05-28 22:35:32 CMD ["/bin/bash"]
189.42MB 2024-05-28 22:35:32 ADD almalinux-8-default-amd64.tar.xz / # buildkit

镜像信息

{
    "Id": "sha256:25d52721af3b9f188b0ae4e640c9ce03ffae89076278cac8e2ac78f0cdcc436e",
    "RepoTags": [
        "ncbi/pgap:2024-07-18.build7555",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap:2024-07-18.build7555"
    ],
    "RepoDigests": [
        "ncbi/pgap@sha256:7ddae9be99ba04db37484ae3ac2f99a02f6c03bf79b214a6f1d5336dacae4763",
        "swr.cn-north-4.myhuaweicloud.com/ddn-k8s/docker.io/ncbi/pgap@sha256:7ddae9be99ba04db37484ae3ac2f99a02f6c03bf79b214a6f1d5336dacae4763"
    ],
    "Parent": "",
    "Comment": "buildkit.dockerfile.v0",
    "Created": "2024-07-19T07:43:30.041375842-04:00",
    "Container": "",
    "ContainerConfig": null,
    "DockerVersion": "",
    "Author": "",
    "Config": {
        "Hostname": "",
        "Domainname": "",
        "User": "root",
        "AttachStdin": false,
        "AttachStdout": false,
        "AttachStderr": false,
        "Tty": false,
        "OpenStdin": false,
        "StdinOnce": false,
        "Env": [
            "PATH=/root/venv/bin/:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/2024-07-18.build7555/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/current/third-party/arch/x86_64/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/bin:/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system/third-party/hmmer/bin:/usr/local/prodigal/2.6.3/bin:/usr/local/pplacer/1.1a18/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
            "PGAP_VERSION=2024-07-18.build7555",
            "GP_HOME=/panfs/pan1.be-md.ncbi.nlm.nih.gov/gpipe/bacterial_pipeline/system",
            "NCBI=/netopt/ncbi_tools64",
            "NI_SERVICE_NAME_TAXONOMY=some bogus value",
            "NI_SERVICE_NAME_TAXONOMY3=some bogus value"
        ],
        "Cmd": [
            "/bin/sh"
        ],
        "ArgsEscaped": true,
        "Image": "",
        "Volumes": null,
        "WorkingDir": "/pgap",
        "Entrypoint": null,
        "OnBuild": null,
        "Labels": null
    },
    "Architecture": "amd64",
    "Os": "linux",
    "Size": 10656780203,
    "GraphDriver": {
        "Data": {
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        "Name": "overlay2"
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    "RootFS": {
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    "Metadata": {
        "LastTagTime": "2024-09-23T01:40:54.417704258+08:00"
    }
}

更多版本

docker.io/ncbi/pgap-utils:2024-07-18.build7555

linux/amd64 docker.io9.59GB2024-09-20 15:54
104

docker.io/ncbi/pgap:2024-07-18.build7555

linux/amd64 docker.io10.66GB2024-09-23 01:42
72